RNA id: TU326001


Basic Information

Item Value
RNA id TU326001
length 227
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G287543
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 66086357 ~ 66086583 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

actgTAGCTAAGatagggagaagtctgtccataataaagtgctactctaccttcttaacagcactatcaacaaggcagatcccacaggctctagttttgtcgcacctggactactgttcagtcgtgaggtcaggtgccacaaagaggtacttaggaaaattgcaattggctcagaacagggcagcacggctggcccttggatgtacacagagagctaacattaataa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU325992 lncRNA upstream 16714 66069328 ~ 66069643 (+) True G287534
TU325989 lncRNA upstream 22226 66063824 ~ 66064131 (+) True G287531
TU325988 lncRNA upstream 22990 66063133 ~ 66063367 (+) True G287530
TU325961 lncRNA upstream 50155 66034420 ~ 66036202 (+) False LOC118964312
TU325963 lncRNA upstream 50155 66034420 ~ 66036202 (+) False LOC118964312
TU326004 lncRNA downstream 4064 66090647 ~ 66090980 (+) True G287546
TU326293 lncRNA downstream 122582 66209165 ~ 66234022 (+) False LOC110520426
TU326294 lncRNA downstream 122582 66209165 ~ 66234022 (+) False LOC110520426
TU326323 lncRNA downstream 149512 66236095 ~ 66243001 (+) True G287817
TU326324 lncRNA downstream 151051 66237634 ~ 66244230 (+) True G287818
XM_036974979.1 mRNA upstream 50058 66027633 ~ 66036299 (+) False LOC118964312
XM_036974984.1 mRNA downstream 21284 66107867 ~ 66161419 (+) False LOC110504495
XM_036974982.1 mRNA downstream 38224 66124807 ~ 66161419 (+) False LOC110504495
XM_036974983.1 mRNA downstream 38224 66124807 ~ 66161419 (+) True LOC110504495
XM_036974985.1 mRNA downstream 122530 66209113 ~ 66268815 (+) False LOC110520426
XM_036974986.1 mRNA downstream 122534 66209117 ~ 66268815 (+) False LOC110520426
TU325972 other upstream 50155 66034420 ~ 66036202 (+) True LOC118964312
TU325080 other upstream 800801 65260445 ~ 65285556 (+) True zmym2
TU325057 other upstream 919777 65161391 ~ 65166580 (+) True LOC110520396
TU325026 other upstream 976720 65109256 ~ 65109637 (+) True G286679
TU324010 other upstream 1778997 64306512 ~ 64307360 (+) True G285763
TU326785 other downstream 463239 66549822 ~ 66550487 (+) True G288252
TU326969 other downstream 644703 66731286 ~ 66733797 (+) False G288430
TU327020 other downstream 696790 66783373 ~ 66784786 (+) True LOC110505407
TU327305 other downstream 906588 66993171 ~ 66994131 (+) True G288674
TU327725 other downstream 1311374 67397957 ~ 67403366 (+) False LOC110520448

Expression Profile