RNA id: TU326426



Basic Information


Item Value
RNA id TU326426
length 329
lncRNA type read_through
GC content 0.51
exon number 3
gene id G287919
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 66209161 ~ 66246589 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CCGCACATTGAtCGGTTTGGGCATCTTTGTCCTCTCTCCAGCCTTGCCCTTCTGCTGAGAAAATGCAAAGAAATCGTCCTCCGTCTCGTTGACTCGCCCTGGGCTCCACTGCCTCAGTAGATGGACTGCGTTCAGAAAATGGTAAACTGCCTCCCCTGGGCCCACAGGGTAGTCTACTTTATATATCCAACGCGACCAAAATAGATCGATTTGTTTACCGTTAGACACTCCGCTGTTTCTCAGCCTTGGTATGGAGTGTGATGTATGAAGCGACTGAGCCAGTTTCACCGCCGGGCAAGAGAGGTGTAGACAGTCAATATGGCCGTCGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU326359 lncRNA downstream 100727 66107872 ~ 66108434 (-) True G287853
TU326199 lncRNA downstream 120604 66088305 ~ 66088557 (-) True G287706
TU326190 lncRNA downstream 133743 66075183 ~ 66075418 (-) True G287697
TU326186 lncRNA downstream 139801 66069137 ~ 66069360 (-) True G287693
TU326147 lncRNA downstream 208972 65997968 ~ 66000189 (-) True G287666
TU326459 lncRNA upstream 31791 66278380 ~ 66278703 (-) True G287951
TU326461 lncRNA upstream 33981 66280570 ~ 66280905 (-) True G287953
TU326462 lncRNA upstream 35024 66281613 ~ 66281866 (-) True G287954
TU326464 lncRNA upstream 37203 66283792 ~ 66284069 (-) True G287956
TU326470 lncRNA upstream 47636 66294225 ~ 66294475 (-) True G287962
LOC110520425 mRNA downstream 15674 66183116 ~ 66193487 (-) True LOC110520425
XM_021597738.2 mRNA downstream 139027 66036342 ~ 66070134 (-) True rnf17
XM_021597737.2 mRNA downstream 181560 66020033 ~ 66027601 (-) True ttf2
XM_021597736.2 mRNA downstream 181797 66020033 ~ 66027364 (-) False ttf2
XM_021597735.2 mRNA downstream 181824 66020033 ~ 66027337 (-) False ttf2
XM_021597740.2 mRNA upstream 21596 66268185 ~ 66295887 (-) True LOC110520429
XR_005051358.1 mRNA upstream 153478 66400067 ~ 66412373 (-) True LOC118964314
XM_036964598.1 mRNA upstream 225750 66472339 ~ 66475059 (-) True LOC118944607
XM_036974988.1 mRNA upstream 243879 66490468 ~ 66537895 (-) True LOC110520431
XM_036974989.1 mRNA upstream 485648 66732237 ~ 66746474 (-) False LOC110504514
TU325523 other downstream 628666 65579791 ~ 65580495 (-) True G287112
TU325443 other downstream 761878 65446825 ~ 65447283 (-) True G287042
TU325373 other downstream 908744 65298207 ~ 65300417 (-) True G286985
TU325334 other downstream 973253 65235180 ~ 65235908 (-) True G286953
TU324969 other downstream 1133176 65054700 ~ 65075985 (-) True G286638
TU327202 other upstream 596082 66842671 ~ 66842881 (-) True G288578
TU328494 other upstream 1380243 67626832 ~ 67633493 (-) True G289678
TU328453 other upstream 1637163 67883752 ~ 67886232 (-) True G289653
TU328904 other upstream 1960001 68206590 ~ 68208395 (-) True si:ch211-214p13.7
TU329440 other upstream 2332514 68579103 ~ 68580707 (-) True G290542

Expression Profile