RNA id: TU326340



Basic Information


Item Value
RNA id TU326340
length 293
lncRNA type antisense_over
GC content 0.48
exon number 1
gene id G287834
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 66273139 ~ 66273431 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CTGCTTCCTGTGTTCTGGGATAACTGGTCTCTTCCTCAGGAAGTTCTCCAGACTGGGACCATGGCGACCCAGAGGATCATCAGGAGGCATGAACCTGGACACAACCACATACCAGACACAACATCAGATATCCACATATCAATCCCCTTGGAAAAACAACTCCAGATACTAATAGTGATAGGCTCTTTGTCCACTGTGTTGGTGGGACTTCCATACTTGTCATTGACGAACGTATACATGAGCAACCGCTCGTCAATGAACTTCTTCCACTCTGGCTTCTCATTGGCCAGGTC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU326296 lncRNA upstream 4826 66267885 ~ 66268313 (+) True LOC110520426
TU326337 lncRNA upstream 11031 66261704 ~ 66262108 (+) True G287831
TU326324 lncRNA upstream 28909 66237634 ~ 66244230 (+) True G287818
TU326323 lncRNA upstream 30138 66236095 ~ 66243001 (+) True G287817
TU326293 lncRNA upstream 39117 66209165 ~ 66234022 (+) False LOC110520426
TU326341 lncRNA downstream 56 66273487 ~ 66273723 (+) True G287835
TU326343 lncRNA downstream 3828 66277259 ~ 66277483 (+) True G287837
TU326348 lncRNA downstream 10271 66283702 ~ 66284014 (+) True G287842
TU326349 lncRNA downstream 11477 66284908 ~ 66285501 (+) True G287843
TU326358 lncRNA downstream 22111 66295542 ~ 66295830 (+) True G287852
XM_036974985.1 mRNA upstream 4324 66209113 ~ 66268815 (+) False LOC110520426
XM_036974986.1 mRNA upstream 4324 66209117 ~ 66268815 (+) False LOC110520426
XM_036974987.1 mRNA upstream 4324 66246603 ~ 66268815 (+) False LOC110520426
XR_002472978.2 mRNA upstream 40949 66228399 ~ 66232190 (+) True LOC110520428
XM_036974984.1 mRNA upstream 111720 66107867 ~ 66161419 (+) False LOC110504495
XM_021583262.2 mRNA downstream 96626 66370057 ~ 66387340 (+) True LOC110504505
XM_021597745.2 mRNA downstream 139022 66412453 ~ 66433149 (+) False LOC110520430
XM_021597741.2 mRNA downstream 139022 66412453 ~ 66434626 (+) True LOC110520430
XM_021597748.2 mRNA downstream 203606 66477037 ~ 66489419 (+) True LOC110520432
XR_005051359.1 mRNA downstream 281123 66554554 ~ 66555551 (+) True LOC118964315
TU325972 other upstream 236937 66034420 ~ 66036202 (+) True LOC118964312
TU325080 other upstream 987583 65260445 ~ 65285556 (+) True zmym2
TU325057 other upstream 1106559 65161391 ~ 65166580 (+) True LOC110520396
TU325026 other upstream 1163502 65109256 ~ 65109637 (+) True G286679
TU324010 other upstream 1965779 64306512 ~ 64307360 (+) True G285763
TU326785 other downstream 276391 66549822 ~ 66550487 (+) True G288252
TU326969 other downstream 457855 66731286 ~ 66733797 (+) False G288430
TU327020 other downstream 509942 66783373 ~ 66784786 (+) True LOC110505407
TU327305 other downstream 719740 66993171 ~ 66994131 (+) True G288674
TU327725 other downstream 1124526 67397957 ~ 67403366 (+) False LOC110520448

Expression Profile