RNA id: TU326484


Basic Information

Item Value
RNA id TU326484
length 233
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G287976
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 66309078 ~ 66309310 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtgcagagcggtacgtgttcatgatttttaataaaactgaacactagaacaaaaaataacaaagcgGAACAAACAAAAGAGTTCTGTCGGAAtgcagacacacaaaacagaaaataactacccacaaaacacaggtaggaaagggctacctaagtatggttctcaatcagagacaacgatagacagctgcctctgattgagaaccacacccggccaaacacacagaaatagaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU326478 lncRNA downstream 8105 66300733 ~ 66300973 (-) True G287970
TU326470 lncRNA downstream 14603 66294225 ~ 66294475 (-) True G287962
TU326464 lncRNA downstream 25009 66283792 ~ 66284069 (-) True G287956
TU326462 lncRNA downstream 27212 66281613 ~ 66281866 (-) True G287954
TU326461 lncRNA downstream 28173 66280570 ~ 66280905 (-) True G287953
TU326500 lncRNA upstream 12683 66321993 ~ 66322192 (-) True G287992
TU326501 lncRNA upstream 13057 66322367 ~ 66322596 (-) True G287993
TU326639 lncRNA upstream 26391 66335701 ~ 66335916 (-) True G288116
TU326702 lncRNA upstream 109508 66418818 ~ 66420930 (-) True G288172
TU326763 lncRNA upstream 218375 66527685 ~ 66532169 (-) True G288230
XM_021597740.2 mRNA downstream 13191 66268185 ~ 66295887 (-) True LOC110520429
LOC110520425 mRNA downstream 115591 66183116 ~ 66193487 (-) True LOC110520425
XM_021597738.2 mRNA downstream 238944 66036342 ~ 66070134 (-) True rnf17
XM_021597737.2 mRNA downstream 281477 66020033 ~ 66027601 (-) True ttf2
XM_021597736.2 mRNA downstream 281714 66020033 ~ 66027364 (-) False ttf2
XR_005051358.1 mRNA upstream 90757 66400067 ~ 66412373 (-) True LOC118964314
XM_036964598.1 mRNA upstream 163029 66472339 ~ 66475059 (-) True LOC118944607
XM_036974988.1 mRNA upstream 181158 66490468 ~ 66537895 (-) True LOC110520431
XM_036974989.1 mRNA upstream 422927 66732237 ~ 66746474 (-) False LOC110504514
XM_036974991.1 mRNA upstream 422927 66732237 ~ 66746475 (-) False LOC110504514
TU325523 other downstream 728583 65579791 ~ 65580495 (-) True G287112
TU325443 other downstream 861795 65446825 ~ 65447283 (-) True G287042
TU325373 other downstream 1008661 65298207 ~ 65300417 (-) True G286985
TU325334 other downstream 1073170 65235180 ~ 65235908 (-) True G286953
TU324969 other downstream 1233093 65054700 ~ 65075985 (-) True G286638
TU327202 other upstream 533361 66842671 ~ 66842881 (-) True G288578
TU328494 other upstream 1317522 67626832 ~ 67633493 (-) True G289678
TU328453 other upstream 1574442 67883752 ~ 67886232 (-) True G289653
TU328904 other upstream 1897280 68206590 ~ 68208395 (-) True si:ch211-214p13.7
TU329440 other upstream 2269793 68579103 ~ 68580707 (-) True G290542

Expression Profile