RNA id: TCONS_00029488


Basic Information

Item Value
RNA id TCONS_00029488
length 771
RNA type mRNA
GC content 0.52
exon number 5
gene id XLOC_014947
representative True

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 36114846 ~ 36675023 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACTAACACTGTTAAACACTTATTCTTGGGTCCAACATTCTGTGTTTgTCACACGCTACACAGTCCAAATGGGACAATAGAAAGCCCCGGATACCCGTATGGATATCCCAACTACGCCAACTGCACATGGGTGATTGTGGCACAGGAACACAACCGGATACAGTTGGTATTTCAAGGCTTTGCCTTAGAGGAGGACTTTGACATCCTTTCAGTCTACGATGGGCAACCCAGTCCCACAAACTTACGGACACGGTTGACGGGGTTTCAACTTCCAGCCCCTATAGTGAGCACAGGCCCCAGACTCACATTATGGTTGCTGTCAGACTATGCCGTAAGTGGCCAGGGATTCAAAGCCGTGTACGAAGCTCTTCCAAGCTACACATGTGGAAATCCAGGCCAGCTGCTCAACGGCATGCAGCAGGGATCCACCTTCAACATCGGGGACAAGATCCGCTACAGCTGCAACCAGGGATATGTTCTGGAGGGCCACACCGTGCTCTCCTGCCTGGCCACATCATCCGGCACCGCTGCCTGGGACTTCCCTCTGCCCTACTGCCGAGCGGATGATGGTTGTGGTGGCACTTTACGGGGTCAAAGCGGTGTTATTACCAGTCCAAATTACCCCCAGGAGTACAACAACAACGCAGACTGCACCTGGACCATCCTAGCCGAACCAGGAGACACCATCGCTCTGGTCTTCTCCGACTTTCAATTGGAAGAAGACTATGATGTACTGGAGATAACCGGCACAGAAGGATCATCTCAGTGGTGA

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030616-39 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human CSMD2 (CUB and Sushi multiple domains 2).

Ensembl:

ensembl_id ENSDART00000189743

JBrowse2

Loading

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00029487 lncRNA downstream 87074 36408994 ~ 36416038 (-) False XLOC_014947
TCONS_00029458 lncRNA downstream 1523288 34966757 ~ 34979824 (-) True XLOC_014933
TCONS_00030301 lncRNA downstream 1815560 34660712 ~ 34687552 (-) False XLOC_014929
TCONS_00030302 lncRNA downstream 1815560 34677004 ~ 34687552 (-) True XLOC_014929
TCONS_00030300 lncRNA downstream 1815582 34660712 ~ 34687530 (-) False XLOC_014929
TCONS_00030303 lncRNA upstream 69821 36710498 ~ 36731093 (-) False XLOC_014948
TCONS_00030304 lncRNA upstream 75469 36716146 ~ 36731093 (-) True XLOC_014948
TCONS_00030305 lncRNA upstream 188274 36828951 ~ 36862051 (-) False XLOC_014949
TCONS_00030306 lncRNA upstream 220899 36861576 ~ 36938485 (-) False XLOC_014949
TCONS_00030307 lncRNA upstream 220899 36861576 ~ 37120328 (-) False XLOC_014949
TCONS_00029486 mRNA downstream 101830 36378302 ~ 36401282 (-) False XLOC_014947
TCONS_00029485 mRNA downstream 268927 36217138 ~ 36234185 (-) False XLOC_014947
TCONS_00029483 mRNA downstream 769711 35722902 ~ 35733401 (-) True XLOC_014946
TCONS_00029482 mRNA downstream 906905 35496282 ~ 35596207 (-) True XLOC_014945
TCONS_00029479 mRNA downstream 1010376 35458822 ~ 35492736 (-) False XLOC_014944
TCONS_00029489 mRNA upstream 512732 37153409 ~ 37154436 (-) True XLOC_014950
TCONS_00029491 mRNA upstream 860975 37501652 ~ 37508571 (-) True XLOC_014952
TCONS_00029495 mRNA upstream 1746578 38387255 ~ 38419575 (-) True XLOC_014960
TCONS_00029498 mRNA upstream 1833081 38473758 ~ 38539670 (-) False XLOC_014963
TCONS_00029499 mRNA upstream 1833890 38474567 ~ 38611814 (-) False XLOC_014963
TCONS_00029481 other downstream 1037532 35462382 ~ 35465580 (-) True XLOC_014944
TCONS_00029473 other downstream 1074218 35421677 ~ 35428894 (-) True XLOC_014941
TCONS_00029472 other downstream 1082161 35420835 ~ 35420951 (-) True XLOC_014942
TCONS_00029451 other downstream 2407435 34092572 ~ 34095677 (-) True XLOC_014926
TCONS_00029449 other downstream 2413807 34080946 ~ 34089305 (-) True XLOC_014925
TCONS_00029490 other upstream 587233 37227910 ~ 37228025 (-) True XLOC_014951
TCONS_00029492 other upstream 996697 37637374 ~ 37637493 (-) True XLOC_014956
TCONS_00029493 other upstream 1387821 38028498 ~ 38028618 (-) True XLOC_014957
TCONS_00029494 other upstream 1421323 38062000 ~ 38062124 (-) True XLOC_014958
TCONS_00029496 other upstream 1823450 38464127 ~ 38464249 (-) True XLOC_014961

Expression Profile

Expression of TCONS_00029488 in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 4.
End of interactive chart.
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Expression of TCONS_00029488 in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 4.
End of interactive chart.

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) AMCG00011088 True 828 mRNA 0.54 3 CM030133.1 10073722 ~ 10087704 (+)