RNA id: TU327420


Basic Information

Item Value
RNA id TU327420
length 743
lncRNA type intronic
GC content 0.45
exon number 1
gene id G288777
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 66921697 ~ 66922439 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTAGTTGTGACTATGCTCTTCATGAGGTGACGATATTACAACCAAATAGTTAACACTTATTTAACAATCCATTGAAAACTGGATgcagttgtcaatggttttagcagAGCTGGGAGTCTCCTTGCCCCCAAGCAGGCAAATCGAACGCTCTGCACCTTATTGTGACATTTGATTGATAACCATCTATAGGCATTGAAATGTGAAGAGGGGCAAACAAACATTACAGAAGAGAAGGAGAATGGCCAAGGACACGGAAGGCTCATTAGCAATAATTGCTCTGTGAGAAATGGAGATTACTGCTGAGAGGAAAATGGAGAAGATGGGTGATACTTCAACActactgtaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgaaggaATTGTATACGAATCCAGTGATGACTAGAGGAATGGACaaatgtctcctctctctgtcttccctcttcctcctcctctcctcctcctctctgagcTGGTGGTGAGAGAGGGATGAATACATTCTGAGGGTTAgcaaggagggaggagagggcgaaCGAGGATGATGATGCAGATGGTGATGAAGATCAAAGAGAATATGAAGAGAAGattgaggaagaggatgatgagtGTTCCTCATGCACACACAGCAGGATGCCCTGAGAGATGTTGAGCCTCACAGCTGGAAGTGCAAAGACTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU327406 lncRNA downstream 27444 66893899 ~ 66894253 (-) True G288766
TU327405 lncRNA downstream 28434 66893056 ~ 66893263 (-) True G288765
TU327401 lncRNA downstream 34169 66887265 ~ 66887528 (-) True G288761
TU327400 lncRNA downstream 35571 66885828 ~ 66886126 (-) True G288760
TU327389 lncRNA downstream 52376 66869094 ~ 66869321 (-) True G288749
TU327423 lncRNA upstream 3837 66926276 ~ 66926502 (-) True G288780
TU327424 lncRNA upstream 4629 66927068 ~ 66927349 (-) True G288781
TU327474 lncRNA upstream 70562 66993001 ~ 66994131 (-) True G288824
TU327480 lncRNA upstream 84828 67007267 ~ 67007539 (-) True G288828
TU327874 lncRNA upstream 274927 67197366 ~ 67197865 (-) True G289187
XM_036974990.1 mRNA downstream 174404 66732237 ~ 66747293 (-) True LOC110504514
XM_036974996.1 mRNA downstream 175217 66732237 ~ 66746480 (-) False LOC110504514
XM_036974992.1 mRNA downstream 175219 66732237 ~ 66746478 (-) False LOC110504514
XM_036974993.1 mRNA downstream 175219 66732237 ~ 66746478 (-) False LOC110504514
XM_036974995.1 mRNA downstream 175221 66732237 ~ 66746476 (-) False LOC110504514
XM_021597756.2 mRNA upstream 98015 67020454 ~ 67023408 (-) True rpe
XM_021597757.2 mRNA upstream 143918 67066357 ~ 67078648 (-) False LOC110520437
XM_021597758.2 mRNA upstream 143918 67066357 ~ 67078648 (-) True LOC110520437
XM_021597762.2 mRNA upstream 302422 67224861 ~ 67236245 (-) True LOC110520442
XM_021597764.2 mRNA upstream 353290 67275729 ~ 67286960 (-) True LOC110520443
TU327202 other downstream 78816 66842671 ~ 66842881 (-) True G288578
TU325523 other downstream 1341202 65579791 ~ 65580495 (-) True G287112
TU325443 other downstream 1474414 65446825 ~ 65447283 (-) True G287042
TU325373 other downstream 1621280 65298207 ~ 65300417 (-) True G286985
TU325334 other downstream 1685789 65235180 ~ 65235908 (-) True G286953
TU328494 other upstream 704393 67626832 ~ 67633493 (-) True G289678
TU328453 other upstream 961313 67883752 ~ 67886232 (-) True G289653
TU328904 other upstream 1284151 68206590 ~ 68208395 (-) True si:ch211-214p13.7
TU329440 other upstream 1656664 68579103 ~ 68580707 (-) True G290542
TU329467 other upstream 1703893 68626332 ~ 68647620 (-) True G290567

Expression Profile