RNA id: TU327423



Basic Information


Item Value
RNA id TU327423
length 227
lncRNA type intronic
GC content 0.46
exon number 1
gene id G288780
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 66926276 ~ 66926502 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


acttcttccattttcgaataattgtgccaacagttgttgccttctcaccaagctgcttgcctattgtcctgtagcccatcccagccttgtgcaggtctacaatgttatccctgatgtccttacacagctctctaggtcttggtcattgtggagaggttggagtctgtttgattgagtgtgtggacaggtgtcttttacacaggtaacgagttcaaacaggtgcagtt

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU327420 lncRNA downstream 3837 66921697 ~ 66922439 (-) True G288777
TU327406 lncRNA downstream 32023 66893899 ~ 66894253 (-) True G288766
TU327405 lncRNA downstream 33013 66893056 ~ 66893263 (-) True G288765
TU327401 lncRNA downstream 38748 66887265 ~ 66887528 (-) True G288761
TU327400 lncRNA downstream 40150 66885828 ~ 66886126 (-) True G288760
TU327424 lncRNA upstream 566 66927068 ~ 66927349 (-) True G288781
TU327474 lncRNA upstream 66499 66993001 ~ 66994131 (-) True G288824
TU327480 lncRNA upstream 80765 67007267 ~ 67007539 (-) True G288828
TU327874 lncRNA upstream 270864 67197366 ~ 67197865 (-) True G289187
TU327884 lncRNA upstream 279269 67205771 ~ 67205978 (-) True G289197
XM_036974990.1 mRNA downstream 178983 66732237 ~ 66747293 (-) True LOC110504514
XM_036974996.1 mRNA downstream 179796 66732237 ~ 66746480 (-) False LOC110504514
XM_036974992.1 mRNA downstream 179798 66732237 ~ 66746478 (-) False LOC110504514
XM_036974993.1 mRNA downstream 179798 66732237 ~ 66746478 (-) False LOC110504514
XM_036974995.1 mRNA downstream 179800 66732237 ~ 66746476 (-) False LOC110504514
XM_021597756.2 mRNA upstream 93952 67020454 ~ 67023408 (-) True rpe
XM_021597757.2 mRNA upstream 139855 67066357 ~ 67078648 (-) False LOC110520437
XM_021597758.2 mRNA upstream 139855 67066357 ~ 67078648 (-) True LOC110520437
XM_021597762.2 mRNA upstream 298359 67224861 ~ 67236245 (-) True LOC110520442
XM_021597764.2 mRNA upstream 349227 67275729 ~ 67286960 (-) True LOC110520443
TU327202 other downstream 83395 66842671 ~ 66842881 (-) True G288578
TU325523 other downstream 1345781 65579791 ~ 65580495 (-) True G287112
TU325443 other downstream 1478993 65446825 ~ 65447283 (-) True G287042
TU325373 other downstream 1625859 65298207 ~ 65300417 (-) True G286985
TU325334 other downstream 1690368 65235180 ~ 65235908 (-) True G286953
TU328494 other upstream 700330 67626832 ~ 67633493 (-) True G289678
TU328453 other upstream 957250 67883752 ~ 67886232 (-) True G289653
TU328904 other upstream 1280088 68206590 ~ 68208395 (-) True si:ch211-214p13.7
TU329440 other upstream 1652601 68579103 ~ 68580707 (-) True G290542
TU329467 other upstream 1699830 68626332 ~ 68647620 (-) True G290567

Expression Profile