RNA id: TU327480


Basic Information

Item Value
RNA id TU327480
length 273
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G288828
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 67007267 ~ 67007539 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cttggttgggttgtgtttcggaggaagcatggcttttgaccttcgtctctcctgtacggttgtagcgatgagacaagatactaacaattggataccacgaaaagggagtctttttttttttaacaacaaaaaaacaatgtcATCAGTGGCACACCATCAGTGTAGTGCTGTGTGACAGATAGGAGATAGTTTCCCATAGAGCCTGCCCTACAGGGTACCACTGGGCCCACGATATGATCCACTAACCCTGCATGCATCAAGTTGACACCAAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU327474 lncRNA downstream 13136 66993001 ~ 66994131 (-) True G288824
TU327424 lncRNA downstream 79918 66927068 ~ 66927349 (-) True G288781
TU327423 lncRNA downstream 80765 66926276 ~ 66926502 (-) True G288780
TU327420 lncRNA downstream 84828 66921697 ~ 66922439 (-) True G288777
TU327406 lncRNA downstream 113014 66893899 ~ 66894253 (-) True G288766
TU327874 lncRNA upstream 189827 67197366 ~ 67197865 (-) True G289187
TU327884 lncRNA upstream 198232 67205771 ~ 67205978 (-) True G289197
TU327886 lncRNA upstream 200594 67208133 ~ 67208438 (-) True G289199
TU327894 lncRNA upstream 204439 67211978 ~ 67212188 (-) True G289205
TU327921 lncRNA upstream 254924 67262463 ~ 67262828 (-) True G289231
XM_036974990.1 mRNA downstream 259974 66732237 ~ 66747293 (-) True LOC110504514
XM_036974996.1 mRNA downstream 260787 66732237 ~ 66746480 (-) False LOC110504514
XM_036974992.1 mRNA downstream 260789 66732237 ~ 66746478 (-) False LOC110504514
XM_036974993.1 mRNA downstream 260789 66732237 ~ 66746478 (-) False LOC110504514
XM_036974995.1 mRNA downstream 260791 66732237 ~ 66746476 (-) False LOC110504514
XM_021597756.2 mRNA upstream 12915 67020454 ~ 67023408 (-) True rpe
XM_021597757.2 mRNA upstream 58818 67066357 ~ 67078648 (-) False LOC110520437
XM_021597758.2 mRNA upstream 58818 67066357 ~ 67078648 (-) True LOC110520437
XM_021597762.2 mRNA upstream 217322 67224861 ~ 67236245 (-) True LOC110520442
XM_021597764.2 mRNA upstream 268190 67275729 ~ 67286960 (-) True LOC110520443
TU327202 other downstream 164386 66842671 ~ 66842881 (-) True G288578
TU325523 other downstream 1426772 65579791 ~ 65580495 (-) True G287112
TU325443 other downstream 1559984 65446825 ~ 65447283 (-) True G287042
TU325373 other downstream 1706850 65298207 ~ 65300417 (-) True G286985
TU325334 other downstream 1771359 65235180 ~ 65235908 (-) True G286953
TU328494 other upstream 619293 67626832 ~ 67633493 (-) True G289678
TU328453 other upstream 876213 67883752 ~ 67886232 (-) True G289653
TU328904 other upstream 1199051 68206590 ~ 68208395 (-) True si:ch211-214p13.7
TU329440 other upstream 1571564 68579103 ~ 68580707 (-) True G290542
TU329467 other upstream 1618793 68626332 ~ 68647620 (-) True G290567

Expression Profile