RNA id: TCONS_00030304


Basic Information

Item Value
RNA id TCONS_00030304
length 801
lncRNA type inter_gene
GC content 0.46
exon number 4
gene id XLOC_014948
representative True

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 36710498 ~ 36731093 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AACACACCTGCTGCCCATCAACAATACAGAACCACACACTTCACCTGCTAGATGATCTCTGCGAGTTCCGGTATTGCATTTGTGCAGAGCTGGAGGCTCACTTGAAGATTTAAATGACAGAAGGCCGCACACTCCCTGCGTGTCAGAGTTCTGCATGTCAGACGGCAGGAGGCATTGAGGGAGATTCGATCCCGAACACTACAAACTGACCACAACAGAAAAGTTGCCCATATGGACATTTGCAGGTCTGACAACATGGAGGTTGTGAGTAAACCTTGCTCCATTTGAAGGTGTGTAAAGGCATTTAGCCTAAAGAAGCCAAAGCAACACGTAACATGAAGGAAACCACAGCAGCATCTCTTCGAGATTGCACCGATTGCAGCTTGCACCAATCGAGAGCTGATATGtgcacaattaaaattaatgtattcatttgatGTCAAGCGCTTTAAATATTTCAGACACTGGAGGGCAGGGGAAGACGATCTGAACAGCACTGCAAGGGCGCTGTATTATTGATTGATCGCGCGCTCAGCTCGTCACGGCCGCTGTTCAGGTGTGCATCTGCGCTCCGGGTTATTAGCGTCCCTGCTGCAGATGGAGAGATCAACTGTGTACTTTTGTGTGCACGATGATGAAATTTTTGCTCAGGGAGAAACTCATCCAAAAAGAAAGGCTGAAAGGGCACTTAGTCTGAAAAGATGTTACAGGGATTCCCATTGTGACCCATGGTGTTGTCCTGCTCAGGGCCATGTTGTGAACACTGTGTTttggagatgtttttttttttttaaggaattg

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00029487 lncRNA downstream 300108 36408994 ~ 36416038 (-) False XLOC_014947
TCONS_00029458 lncRNA downstream 1736322 34966757 ~ 34979824 (-) True XLOC_014933
TCONS_00030301 lncRNA downstream 2028594 34660712 ~ 34687552 (-) False XLOC_014929
TCONS_00030302 lncRNA downstream 2028594 34677004 ~ 34687552 (-) True XLOC_014929
TCONS_00030300 lncRNA downstream 2028616 34660712 ~ 34687530 (-) False XLOC_014929
TCONS_00030305 lncRNA upstream 97858 36828951 ~ 36862051 (-) False XLOC_014949
TCONS_00030306 lncRNA upstream 130483 36861576 ~ 36938485 (-) False XLOC_014949
TCONS_00030307 lncRNA upstream 130483 36861576 ~ 37120328 (-) False XLOC_014949
TCONS_00030308 lncRNA upstream 155203 36886296 ~ 37099270 (-) False XLOC_014949
TCONS_00030309 lncRNA upstream 256391 36987484 ~ 37099275 (-) True XLOC_014949
TCONS_00029484 mRNA downstream 41123 36114846 ~ 36675023 (-) False XLOC_014947
TCONS_00029488 mRNA downstream 75469 36503112 ~ 36640677 (-) True XLOC_014947
TCONS_00029486 mRNA downstream 314864 36378302 ~ 36401282 (-) False XLOC_014947
TCONS_00029485 mRNA downstream 481961 36217138 ~ 36234185 (-) False XLOC_014947
TCONS_00029483 mRNA downstream 982745 35722902 ~ 35733401 (-) True XLOC_014946
TCONS_00029489 mRNA upstream 422316 37153409 ~ 37154436 (-) True XLOC_014950
TCONS_00029491 mRNA upstream 770559 37501652 ~ 37508571 (-) True XLOC_014952
TCONS_00029495 mRNA upstream 1656162 38387255 ~ 38419575 (-) True XLOC_014960
TCONS_00029498 mRNA upstream 1742665 38473758 ~ 38539670 (-) False XLOC_014963
TCONS_00029499 mRNA upstream 1743474 38474567 ~ 38611814 (-) False XLOC_014963
TCONS_00029481 other downstream 1250566 35462382 ~ 35465580 (-) True XLOC_014944
TCONS_00029473 other downstream 1287252 35421677 ~ 35428894 (-) True XLOC_014941
TCONS_00029472 other downstream 1295195 35420835 ~ 35420951 (-) True XLOC_014942
TCONS_00029451 other downstream 2620469 34092572 ~ 34095677 (-) True XLOC_014926
TCONS_00029449 other downstream 2626841 34080946 ~ 34089305 (-) True XLOC_014925
TCONS_00029490 other upstream 496817 37227910 ~ 37228025 (-) True XLOC_014951
TCONS_00029492 other upstream 906281 37637374 ~ 37637493 (-) True XLOC_014956
TCONS_00029493 other upstream 1297405 38028498 ~ 38028618 (-) True XLOC_014957
TCONS_00029494 other upstream 1330907 38062000 ~ 38062124 (-) True XLOC_014958
TCONS_00029496 other upstream 1733034 38464127 ~ 38464249 (-) True XLOC_014961

Expression Profile

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