RNA id: TU327894



Basic Information


Item Value
RNA id TU327894
length 211
lncRNA type intronic
GC content 0.42
exon number 1
gene id G289205
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 67211978 ~ 67212188 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gccatcTGGATTCGTGACGCATTGcatgacagaaacaaacatctctctggtaaaaaGAAGGGCGGAGGTGTATGCCTaatgattaacgagtcgtggtgagatcataacaacatacgggaactcaagtcattttgttcacctgacctagaattccttacaatcaaatgccgcccgcattatctaccaagagatttctcttcgattataatca

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU327886 lncRNA downstream 3540 67208133 ~ 67208438 (-) True G289199
TU327884 lncRNA downstream 6000 67205771 ~ 67205978 (-) True G289197
TU327874 lncRNA downstream 14113 67197366 ~ 67197865 (-) True G289187
TU327480 lncRNA downstream 204439 67007267 ~ 67007539 (-) True G288828
TU327474 lncRNA downstream 217847 66993001 ~ 66994131 (-) True G288824
TU327921 lncRNA upstream 50275 67262463 ~ 67262828 (-) True G289231
TU327889 lncRNA upstream 76435 67288623 ~ 67294508 (-) True G289200
TU328013 lncRNA upstream 172214 67384402 ~ 67384606 (-) True G289308
TU328015 lncRNA upstream 173638 67385826 ~ 67386139 (-) True G289310
TU328016 lncRNA upstream 174360 67386548 ~ 67386770 (-) True G289311
XM_021597757.2 mRNA downstream 133330 67066357 ~ 67078648 (-) False LOC110520437
XM_021597758.2 mRNA downstream 133330 67066357 ~ 67078648 (-) True LOC110520437
XM_021597756.2 mRNA downstream 188570 67020454 ~ 67023408 (-) True rpe
XM_036974990.1 mRNA downstream 464685 66732237 ~ 66747293 (-) True LOC110504514
XM_036974996.1 mRNA downstream 465498 66732237 ~ 66746480 (-) False LOC110504514
XM_021597762.2 mRNA upstream 12673 67224861 ~ 67236245 (-) True LOC110520442
XM_021597764.2 mRNA upstream 63541 67275729 ~ 67286960 (-) True LOC110520443
XM_036975007.1 mRNA upstream 312413 67524601 ~ 67541697 (-) False LOC110520451
XM_036975006.1 mRNA upstream 312413 67524601 ~ 67541920 (-) False LOC110520451
XM_021597777.2 mRNA upstream 312413 67524601 ~ 67542329 (-) False LOC110520451
TU327202 other downstream 369097 66842671 ~ 66842881 (-) True G288578
TU325523 other downstream 1631483 65579791 ~ 65580495 (-) True G287112
TU325443 other downstream 1764695 65446825 ~ 65447283 (-) True G287042
TU325373 other downstream 1911561 65298207 ~ 65300417 (-) True G286985
TU325334 other downstream 1976070 65235180 ~ 65235908 (-) True G286953
TU328494 other upstream 414644 67626832 ~ 67633493 (-) True G289678
TU328453 other upstream 671564 67883752 ~ 67886232 (-) True G289653
TU328904 other upstream 994402 68206590 ~ 68208395 (-) True si:ch211-214p13.7
TU329440 other upstream 1366915 68579103 ~ 68580707 (-) True G290542
TU329467 other upstream 1414144 68626332 ~ 68647620 (-) True G290567

Expression Profile