RNA id: TU328020



Basic Information


Item Value
RNA id TU328020
length 556
lncRNA type antisense_over
GC content 0.50
exon number 1
gene id G289315
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 67389635 ~ 67390190 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GTGTTGAAGGGGCTGGAGGGGTTGAAAGAGAGCACACGCTAGAGATGATGGGCATGTGGTTGGAGGAAGGGCTGGTCCCTatgaagagagagatacattTATATCAACACTTACATTATCAAAAACATCCCCACCAACATAACATACACAGTTCACAGTAGACGTACCTGATTGAGTGAGGGGAGAGATCCTGAGAGGAGATGATCTGGGCCTAGCACTGAGTGGTGATGCTGTGGTAGCCCTAGTGCTCAGTGGTGCCTTCACATTAACTCTGACTGTAGGGGGAGCAGAAGCTGGAGACATCTGTACAGCTGTCCTGAAGCTCTACAAATGACAGAGGAAAGGAAGGACATGAGTAGGAAGACTGTATTGGCTGTTTTTATTCAACTAGCTAGTCCTCCTCGCCTCTGTACTAGGTGCTGCTATATGACATATCTAGACCCACCGATGTCTTTATTAGCTGCAGTTTCAGGTCCTCCTGTTGGCGCCTCAGAGCTTCGTTCTGCCGAGCCAGCGCTGCGATCCGCATCCGCTCTGCCTTCTTCTGCTCATCttc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU328017 lncRNA downstream 1591 67387627 ~ 67388044 (-) True G289312
TU328016 lncRNA downstream 2865 67386548 ~ 67386770 (-) True G289311
TU328015 lncRNA downstream 3496 67385826 ~ 67386139 (-) True G289310
TU328013 lncRNA downstream 5029 67384402 ~ 67384606 (-) True G289308
TU327889 lncRNA downstream 95127 67288623 ~ 67294508 (-) True G289200
TU328026 lncRNA upstream 13362 67403552 ~ 67404548 (-) True G289321
TU328027 lncRNA upstream 14377 67404567 ~ 67404790 (-) True G289322
TU328028 lncRNA upstream 14787 67404977 ~ 67405462 (-) True G289323
TU328030 lncRNA upstream 15504 67405694 ~ 67406129 (-) True G289325
TU328033 lncRNA upstream 21468 67411658 ~ 67429546 (-) False G289327
XM_021597764.2 mRNA downstream 102675 67275729 ~ 67286960 (-) True LOC110520443
XM_021597762.2 mRNA downstream 153390 67224861 ~ 67236245 (-) True LOC110520442
XM_021597757.2 mRNA downstream 310987 67066357 ~ 67078648 (-) False LOC110520437
XM_021597758.2 mRNA downstream 310987 67066357 ~ 67078648 (-) True LOC110520437
XM_021597756.2 mRNA downstream 366227 67020454 ~ 67023408 (-) True rpe
XM_036975007.1 mRNA upstream 134411 67524601 ~ 67541697 (-) False LOC110520451
XM_036975006.1 mRNA upstream 134411 67524601 ~ 67541920 (-) False LOC110520451
XM_021597777.2 mRNA upstream 134411 67524601 ~ 67542329 (-) False LOC110520451
XM_021597778.2 mRNA upstream 134411 67524601 ~ 67542329 (-) True LOC110520451
XM_021597780.2 mRNA upstream 155407 67545597 ~ 67552019 (-) False LOC110520452
TU327202 other downstream 546754 66842671 ~ 66842881 (-) True G288578
TU325523 other downstream 1809140 65579791 ~ 65580495 (-) True G287112
TU325443 other downstream 1942352 65446825 ~ 65447283 (-) True G287042
TU325373 other downstream 2089218 65298207 ~ 65300417 (-) True G286985
TU325334 other downstream 2153727 65235180 ~ 65235908 (-) True G286953
TU328494 other upstream 236642 67626832 ~ 67633493 (-) True G289678
TU328453 other upstream 493562 67883752 ~ 67886232 (-) True G289653
TU328904 other upstream 816400 68206590 ~ 68208395 (-) True si:ch211-214p13.7
TU329440 other upstream 1188913 68579103 ~ 68580707 (-) True G290542
TU329467 other upstream 1236142 68626332 ~ 68647620 (-) True G290567

Expression Profile