RNA id: TU328032


Basic Information

Item Value
RNA id TU328032
length 1699
lncRNA type antisense_over
GC content 0.45
exon number 2
gene id G289327
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 67411658 ~ 67429546 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATTATCTGACTTTTAAAATGAAATTCTGAACATATTCAATGTCTCCATAGTATGTGCACGCATTGCATTGAGTATGAAGGAGGTtcttatatataaaaaaaaatcagtatTGAGACAGTAATGTTGATTACACATTTTAGAGATTCACATTTAGACCTGACAGTTTTCCCTTTCATAGATAGATAGGCAGCATTGGAAAAGACAACGGGAGGAAACAGACCCTTACCCCCAACTAGCCAACTCATGGGCCCAATCCCAAATAGATCCCTAGACCCTATGCACTTGTGGAGAACTGAGTGGATTTGacaggtgtaagcaatatggtaATACCTTGTCGTTTTATCTGCTACAGGGAAGTTTCTCCATATTGCTTCTATCAATCAAATCCTCTCCGATCTCAACAAGTGCATAGGGTGTAGGGGTCCTTTAGTGATTGGGCCTATTCCCCCCTCCCAACCCCCTTTCCCAAACTGAAGGTGAGACTAGAGAACCGATACATAGACAAACACCAGTCAACTCATCTCTCAACACCAAAGACAGTAGAAGAAACCCAATATACCTCCTCGTTTTTAACAGACACTACATCTCCACCCCTGTGAACTTTCAAGTTTTCAAATCTGGGCCTCgtctactctccggctaccccTCCGTTACATCAATGTACTGAATCTTAGGTTTACAACAAAGCtatggtacactacatgaccaaaagtatgtggacacctgctcgtcgaacatctcattccaaaatcgtgggcattaatatggagttggtcctccttatgctgctataacagccttcactcttctgggaaggctttccactagatgttggaacattgctgcagggacttgcttccattcagccacaagtgcattagtgagatcgggcactgatgttgggcgattaggcctggcttgcagtcagtgttctaattcattccaaaggtgttcgatggggttgaggtcaggtctctgtgcaggccagttttCCCACACCAATCtcaataaaccatttctgtaaggacctcgctttgtgcaagggggcattgtcatgctgaaacaggaaagggccttccccaaactgttgccacaaagttggaagcacagaatcgtctggaatgtcattgtatgcagtagtgacattcccttcactggaactaaggggcctagtccgaaccatgacaaacagcaccagaccattattcctccaccaccaaactttacagttggcactatgcattcgggcaggaagcgttcttctggcatcccCCAAACCCAGATTGATCCGTCGGTGAAGAGTGACTCACCAtccggggcagcaggtagcctagtggttagagcactggGCCAGTAAACTAAAGgtcgctggatcgaatccccgaactgacaaggtaaatatttgtcgttctgcccctgaacgaggcagttaactcactgttcctaggccgtcattgtaaataagaatattttcttaactgacttgcctagttaaataaaaataaaatctctagagaacgtgtttccactgctccaatgtCCAATGTCGGCAAACcttacaccactccagacgacacttggcattgcatatggtgatcttaggcttgtgtgcgtgcggctgctcggccatggagacCCATTTCTTGAAGCTCCTGACAGTTCTTGTGTtgccgttgcttccagaggcagtttggaact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU328030 lncRNA downstream 21694 67405694 ~ 67406129 (-) True G289325
TU328028 lncRNA downstream 22361 67404977 ~ 67405462 (-) True G289323
TU328027 lncRNA downstream 23033 67404567 ~ 67404790 (-) True G289322
TU328026 lncRNA downstream 23275 67403552 ~ 67404548 (-) True G289321
TU328020 lncRNA downstream 37633 67389635 ~ 67390190 (-) True G289315
TU328049 lncRNA upstream 4096 67433642 ~ 67433848 (-) True G289337
TU328058 lncRNA upstream 24868 67454414 ~ 67455126 (-) True G289346
TU328069 lncRNA upstream 45071 67474617 ~ 67478030 (-) True G289356
TU328073 lncRNA upstream 49643 67479189 ~ 67484662 (-) True G289360
TU328092 lncRNA upstream 72067 67501613 ~ 67502129 (-) False G289371
XM_021597764.2 mRNA downstream 140863 67275729 ~ 67286960 (-) True LOC110520443
XM_021597762.2 mRNA downstream 191578 67224861 ~ 67236245 (-) True LOC110520442
XM_021597757.2 mRNA downstream 349175 67066357 ~ 67078648 (-) False LOC110520437
XM_021597758.2 mRNA downstream 349175 67066357 ~ 67078648 (-) True LOC110520437
XM_021597756.2 mRNA downstream 404415 67020454 ~ 67023408 (-) True rpe
XM_036975007.1 mRNA upstream 95055 67524601 ~ 67541697 (-) False LOC110520451
XM_036975006.1 mRNA upstream 95055 67524601 ~ 67541920 (-) False LOC110520451
XM_021597777.2 mRNA upstream 95055 67524601 ~ 67542329 (-) False LOC110520451
XM_021597778.2 mRNA upstream 95055 67524601 ~ 67542329 (-) True LOC110520451
XM_021597780.2 mRNA upstream 116051 67545597 ~ 67552019 (-) False LOC110520452
TU327202 other downstream 584942 66842671 ~ 66842881 (-) True G288578
TU325523 other downstream 1847328 65579791 ~ 65580495 (-) True G287112
TU325443 other downstream 1980540 65446825 ~ 65447283 (-) True G287042
TU325373 other downstream 2127406 65298207 ~ 65300417 (-) True G286985
TU325334 other downstream 2191915 65235180 ~ 65235908 (-) True G286953
TU328494 other upstream 197286 67626832 ~ 67633493 (-) True G289678
TU328453 other upstream 454206 67883752 ~ 67886232 (-) True G289653
TU328904 other upstream 777044 68206590 ~ 68208395 (-) True si:ch211-214p13.7
TU329440 other upstream 1149557 68579103 ~ 68580707 (-) True G290542
TU329467 other upstream 1196786 68626332 ~ 68647620 (-) True G290567

Expression Profile