RNA id: TU327792



Basic Information


Item Value
RNA id TU327792
length 1682
RNA type TUCP
GC content 0.48
exon number 2
gene id G289116
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 67474973 ~ 67478929 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ggtttctgctgtgtgtgtgtggtttctgctgtgtgtgtgtgtgtgtgtggtttctgctgtgtgtgtgtgtgtggtttctgctgcgtgtgtggtttctgctgtgtgtggtttgtgctgtgtgtgtggtttgtgctgtgtgtgtgtggtttctgctgtgtgtgtgtgtgtgtgtgtgtgtgttttgtttctgctttgtatgtgtgtgtggtttctgctgtgtgtgtgtggtttctgctgtgtgtgtgtgggggttctgctgtgtgtgtgtgtgggttctgctgtgtgtgtgtgggggttctgctgtgtgtgtgtgtctgtttgtgtggtttctgctgtgtgtggtttcttctgctgtgtgtgtgtgtgtgtgtgtgtgcgttttgtttctgctgtgtgtgtgtgtttgtttgtttggtttcTGCTGTGTGTCTGGTTTCTTCTGCGTGTGTTGtttctgctgtgtgtctgtgtgtgtggtttcttctgtgtgtggtttctgctgtgtgtgtgtgtggtttctgctgtgtgtgtgtgtgtggtttctgctgtgtttgtgctgtgtgtggtttgtgctgtgtgtggtttctgctgtgtgtgtgggttctgctgtgtgtgtttgtgtgtgtgtgtggtttctgctgtgtgtgtttggttagtgtgtgtgtgtttggttagtgtgtgtgtttggtttatgctgtgtgtgtgtgtgtgtgggttctgctgtgtgtgtgtgtgtgtggtttctgctgtgtgtgtgtgtggtttctgctgtgtgtgtgtgtgtgtgtggtttctgctgtgtgtgtgtggtttctgctgtgttttgtttctgctgtgtgtggtttctgctgtgtgtgtgtgtgtgtgtgtggtttctgctgtgtgtgtgtgtgtgtgtgggttctgctgtgtgtgtgtgtgtgggttctgctgtgtgtgtggtttctgctgtgtgtgtgtgtgtgtgtgtgtgttttgtttctgctttgtatgtgtgtgtggtttctgctgtgtatgtgtgttttgtttctgctgtgtgtgtgtggtttctgctgtgtgtgtgtgtgtctgtctgtgtggtttctgctttgtgtgtgtggtttctgttGTGTGTTTTTCGTGTGTGGTTTCTTCTGCGTGTGTGttgtttctgctgtgtgtgtggtttctgctgtgtgtgtggtttctgctgtgtgtgtggtttcttatgtgtgtttgttgtttctgttgtgtgtgtgtgtggtttctgctgtgtgtgtgtgtgtgtggtttctgctgtgtgtgtgtgtgtgtgtggtttctgctgtgtgtgtgtgtgtgtgggggttctgctgtgtgtatgtgtgttttgtttctgctttgtatgtgtgtgtggtttctgctgtgtgtgtgtgtgtgtgtgttgtttctgctgtgtgtgtggtttcttctgtgtgtttgttgtttctgttgtgtgtgtgtgtgtgtgtgtgtgtggtttctgctgtgtgtgtgtgtggtttctgctgtgtgtgtgtgtggtttctgctgtgtgtgtgtgtgggttctgctgtgtgtgtgtgtgtgggttctgctgtgtgtgtgggttctgctgtgtgtgtgtgtgttttgtttctgctttgtatgtgtgtgtggtttctgctgtgtgtgtgtgtgtgttttgtttctgctgtgtgtgtgtg

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU327786 lncRNA upstream 20406 67454278 ~ 67454567 (+) True G289111
TU327781 lncRNA upstream 38372 67436309 ~ 67436601 (+) True G289106
TU327779 lncRNA upstream 38956 67434519 ~ 67436017 (+) True G289104
TU327717 lncRNA upstream 45470 67411665 ~ 67429503 (+) True G289043
TU327769 lncRNA upstream 70360 67404387 ~ 67404613 (+) True G289094
TU327806 lncRNA downstream 31834 67510763 ~ 67510991 (+) True G289130
TU327810 lncRNA downstream 39577 67518506 ~ 67518799 (+) True G289134
TU327813 lncRNA downstream 41955 67520884 ~ 67521229 (+) True G289136
TU327814 lncRNA downstream 42622 67521551 ~ 67521752 (+) True LOC118964316
TU327817 lncRNA downstream 43174 67522103 ~ 67526207 (+) False G289138
XM_021597775.2 mRNA upstream 46601 67418016 ~ 67428372 (+) True LOC110520449
XM_036975000.1 mRNA upstream 65327 67397151 ~ 67409646 (+) False LOC110520448
XM_021597773.2 mRNA upstream 65327 67397153 ~ 67409646 (+) False LOC110520448
XM_021597771.2 mRNA upstream 65327 67397850 ~ 67409646 (+) False LOC110520448
XM_021597774.2 mRNA upstream 65327 67397864 ~ 67409646 (+) False LOC110520448
XR_002470759.2 mRNA downstream 40441 67519370 ~ 67520162 (+) False LOC110505416
XR_005051361.1 mRNA downstream 42629 67521558 ~ 67522717 (+) False LOC118964316
XM_036975008.1 mRNA downstream 120972 67599901 ~ 67603232 (+) True LOC110504522
XM_036965127.1 mRNA downstream 247964 67726893 ~ 67734046 (+) False LOC118936465
XR_002472983.2 mRNA downstream 402487 67881416 ~ 67886396 (+) False LOC110520459
TU327715 other upstream 65423 67407322 ~ 67409550 (+) True LOC110520448
TU327725 other upstream 71607 67397957 ~ 67403366 (+) False LOC110520448
TU327305 other upstream 480842 66993171 ~ 66994131 (+) True G288674
TU327020 other upstream 690187 66783373 ~ 66784786 (+) True LOC110505407
TU326969 other upstream 741176 66731286 ~ 66733797 (+) False G288430
TU327812 other downstream 40397 67519326 ~ 67519970 (+) True LOC110505416
TU328193 other downstream 146424 67625353 ~ 67632210 (+) False G289455
TU328195 other downstream 146424 67625353 ~ 67632210 (+) True G289455
TU328233 other downstream 199933 67678862 ~ 67682122 (+) False G289486
TU328273 other downstream 282808 67761737 ~ 67762423 (+) True G289517

Expression Profile


TU327792 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 3.
End of interactive chart.

TU327792 Expression in each Bioproject

Bar chart with 20 bars.
TU327792 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 75.
End of interactive chart.