RNA id: TU328073


Basic Information

Item Value
RNA id TU328073
length 2779
lncRNA type intronic
GC content 0.51
exon number 2
gene id G289360
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 67479189 ~ 67484662 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acacacacacaacggaaTCCACCCATATAGCAGAaataatacacagacacacagcagaaaccacaaacacacacacacagaagaaacAGCAAAAACCACACACACCcgtcccacaaacacacaggagaaaccagacgcacgcacacacacacacacaggagaaaccacacgcACACAGGagaaaacacacgcacgcacacacacaggagaaaccacacgcacaggagaaaccacacgcgcacacacacacacaggagaaaccacacgcacacacacacacacaggagaaaccacacgcacgcacacacaggagaaaccacacgcacaggagaaaccacacacacacacaggagaaaccacacgcacacacacacacacacacaggagaaaccacacgcacgcacacacaggagaaaccacacgcacaggagaaaccacacacacacacacacacacacacaggagaaaccacacacaggagaaaccacacacacacacacacacacacaggagaaaccacacacacacaggagaaaccacacacacaggaaaaaccacacacacaggagaaaccacacacacacacaggagaaaccacacgcacacacacacaggagaaaccacacgcacacacacacaggagaaaccacacacacacaggagaaaccacacacacacacacgagaaaccacacacacaggagaaaccacacacacacaaacacacacaggagaaaccacacacacacaaacacacacaggagaaaccacacacacaggagaaaccacacacacacacacacaggagaaaccacacgcacacacacacaggagaaaccacacacacacacaggagaaaccacacacacacacaggagaaaccacacacacacacacaggagaaaccacacacacacaggagaaaccacacacacacacacaggagaaaccacacacacacaggagaaaccacacacacacacacacacaggagaaaccacacacacacacacacaggagaaaccacacgcacacacacacaggagaaaccacacacacacacaggagaaaccacacgcacacacacacaggagaaaccacacgcacacacacacacacacaggagaaaccacacacacacaggagaaaccacacacacacaggagaaaccacacacacacacgagaaaccacacacacacacgagaaaccacacacacacacacacacacacaggagaaaccacacacacacacacacacacacacacaggagaaaccacacacacacacacacacacacacgagaaaccacacacacaggagaaaccacacacacacacacacaggagaaaccacacacacaggagaaaccacacacacaggagaaaccacacacacaggagaaaccacacacacacacacacacacacacacacacaggagaaaccactcgcgcacacacacacacaggagaaaccactcgcacacacacacacacacacacaggagaaaccacacgcacacacacacacacaggagaaaccacacgcACAAGAtaaaccacacgcacacacacaggagaaaccacacacacacatacacacaggagaaaccacacacacacacacacacacaggagaaaccacacacacaggagaaaccacacacacacacacacacaggagaaacgacacacacacacacacacacaggagaaaccacacacacacacacacaaacacacacacacaggagaaatcacacacacacaggagaaaccgcacacacacaggagaaaccactcgcacacacacacacacaggagaaaccacacacacaggagaaaccacacgcacacacacacaggagaaaccacacgcACAAGAtaaaccacacgcacacacacacacacaggagaaaccacacgcacacacacaggagaaaccacacacacacacacaggagaaaccacacacacaggagaaaccacacacacacacacacacacacacacacacacaggagaaacgacacacacacacacacacacacacaggagaaaccacacacacacacaggataaaccacacacacacacacaggagaaacaacacacacacacacacacgcacacacacacacacacacaggagaaaccacacacgcacgcacacacaggagaaaccacacacgcacacacacacaggagaaaccacacacgcacacacacacaggagaaaccacacacgcacacacaggagaaaccacacacacacacacaggagaaaccacacacgcacacacaggagaaaccacacacacacacacacacacacaggagaaaccacacacacacacacacacacacacaggagaaaccacacacacacacacacacacacacacaggagaaaccacacacacacacacaggagaaaccacacacgcacacacacacacacaggagaaaccacacacgcacacacacaggaaaaacaacacacacacacacacacacacacaggagaaaccacacacgcacacacacaggagaaaccacacacgcacgcacacacacacgcacacacaggagaaaccacacacgcgcacacacacacacaggataaaccacacacgcacacacaggagaaaccacacacgcacacacaggagaaaccacacgcacacacacacacaggagaaaccacacacacgagaaaccacacacacacacaggagaaaccacacacacacacagcagaaaccacacacacacaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU328069 lncRNA downstream 1159 67474617 ~ 67478030 (-) True G289356
TU328058 lncRNA downstream 24063 67454414 ~ 67455126 (-) True G289346
TU328049 lncRNA downstream 45341 67433642 ~ 67433848 (-) True G289337
TU328033 lncRNA downstream 49643 67411658 ~ 67429546 (-) False G289327
TU328032 lncRNA downstream 49643 67427823 ~ 67429546 (-) True G289327
TU328092 lncRNA upstream 16951 67501613 ~ 67502129 (-) False G289371
TU328091 lncRNA upstream 17199 67501861 ~ 67502129 (-) True G289371
TU328099 lncRNA upstream 28252 67512914 ~ 67513155 (-) True G289378
TU328106 lncRNA upstream 34220 67518882 ~ 67519252 (-) True G289382
TU328118 lncRNA upstream 59166 67543828 ~ 67544233 (-) True G289394
XM_021597764.2 mRNA downstream 192229 67275729 ~ 67286960 (-) True LOC110520443
XM_021597762.2 mRNA downstream 242944 67224861 ~ 67236245 (-) True LOC110520442
XM_021597757.2 mRNA downstream 400541 67066357 ~ 67078648 (-) False LOC110520437
XM_021597758.2 mRNA downstream 400541 67066357 ~ 67078648 (-) True LOC110520437
XM_021597756.2 mRNA downstream 455781 67020454 ~ 67023408 (-) True rpe
XM_036975007.1 mRNA upstream 39939 67524601 ~ 67541697 (-) False LOC110520451
XM_036975006.1 mRNA upstream 39939 67524601 ~ 67541920 (-) False LOC110520451
XM_021597777.2 mRNA upstream 39939 67524601 ~ 67542329 (-) False LOC110520451
XM_021597778.2 mRNA upstream 39939 67524601 ~ 67542329 (-) True LOC110520451
XM_021597780.2 mRNA upstream 60935 67545597 ~ 67552019 (-) False LOC110520452
TU327202 other downstream 636308 66842671 ~ 66842881 (-) True G288578
TU325523 other downstream 1898694 65579791 ~ 65580495 (-) True G287112
TU325443 other downstream 2031906 65446825 ~ 65447283 (-) True G287042
TU325373 other downstream 2178772 65298207 ~ 65300417 (-) True G286985
TU325334 other downstream 2243281 65235180 ~ 65235908 (-) True G286953
TU328494 other upstream 142170 67626832 ~ 67633493 (-) True G289678
TU328453 other upstream 399090 67883752 ~ 67886232 (-) True G289653
TU328904 other upstream 721928 68206590 ~ 68208395 (-) True si:ch211-214p13.7
TU329440 other upstream 1094441 68579103 ~ 68580707 (-) True G290542
TU329467 other upstream 1141670 68626332 ~ 68647620 (-) True G290567

Expression Profile