RNA id: TU327806


Basic Information

Item Value
RNA id TU327806
length 229
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G289130
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 67510763 ~ 67510991 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acataaatattcagaccctttgctatgagactcaaaattgagctcaggtgcatcctatttccattcatcatccttgagaggtttctacaacttgatggagtctggggtaaattcaattaattggacatgatttgaaaaggcacacgacacacctgtctatgtaaggtcccatatttgacagtgcatgctagaacaaaaaccaagccatgaggtcaaaggaattgtccgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU327786 lncRNA upstream 56196 67454278 ~ 67454567 (+) True G289111
TU327781 lncRNA upstream 74162 67436309 ~ 67436601 (+) True G289106
TU327779 lncRNA upstream 74746 67434519 ~ 67436017 (+) True G289104
TU327717 lncRNA upstream 81260 67411665 ~ 67429503 (+) True G289043
TU327769 lncRNA upstream 106150 67404387 ~ 67404613 (+) True G289094
TU327810 lncRNA downstream 7515 67518506 ~ 67518799 (+) True G289134
TU327813 lncRNA downstream 9893 67520884 ~ 67521229 (+) True G289136
TU327814 lncRNA downstream 10560 67521551 ~ 67521752 (+) True LOC118964316
TU327817 lncRNA downstream 11112 67522103 ~ 67526207 (+) False G289138
TU327818 lncRNA downstream 11112 67522103 ~ 67526207 (+) False G289138
XM_036975001.1 mRNA upstream 6539 67461512 ~ 67504224 (+) False LOC110520450
XM_036975002.1 mRNA upstream 6539 67461512 ~ 67504224 (+) False LOC110520450
XM_036975004.1 mRNA upstream 6539 67461512 ~ 67504224 (+) False LOC110520450
XM_036975005.1 mRNA upstream 6539 67461512 ~ 67504224 (+) False LOC110520450
XM_036975003.1 mRNA upstream 6539 67461754 ~ 67504224 (+) True LOC110520450
XR_002470759.2 mRNA downstream 8379 67519370 ~ 67520162 (+) False LOC110505416
XR_005051361.1 mRNA downstream 10567 67521558 ~ 67522717 (+) False LOC118964316
XM_036975008.1 mRNA downstream 88910 67599901 ~ 67603232 (+) True LOC110504522
XM_036965127.1 mRNA downstream 215902 67726893 ~ 67734046 (+) False LOC118936465
XR_002472983.2 mRNA downstream 370425 67881416 ~ 67886396 (+) False LOC110520459
TU327792 other upstream 31834 67474973 ~ 67478929 (+) True G289116
TU327715 other upstream 101213 67407322 ~ 67409550 (+) True LOC110520448
TU327725 other upstream 107397 67397957 ~ 67403366 (+) False LOC110520448
TU327305 other upstream 516632 66993171 ~ 66994131 (+) True G288674
TU327020 other upstream 725977 66783373 ~ 66784786 (+) True LOC110505407
TU327812 other downstream 8335 67519326 ~ 67519970 (+) True LOC110505416
TU328193 other downstream 114362 67625353 ~ 67632210 (+) False G289455
TU328195 other downstream 114362 67625353 ~ 67632210 (+) True G289455
TU328233 other downstream 167871 67678862 ~ 67682122 (+) False G289486
TU328273 other downstream 250746 67761737 ~ 67762423 (+) True G289517

Expression Profile