RNA id: TU327810


Basic Information

Item Value
RNA id TU327810
length 294
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G289134
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 67518506 ~ 67518799 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACACTGTGGTATTTCCTCAGAACACTGTttcaaagaagaaaaaaaacacacagaaaaacattctctctctccctctctgtcttacactctctctctacccccccctctctctctaagacCACACAAACACATCCTGTATCAGTTTGACTACCCCAGACACTCTTATGCATGATTGTCTCACACCTCTGTATGTTAGACTAACATAAAATTGTCAACAGTTATTTgggacagtacacacacaaactaacaaaatagcaaaaCGAATAGTTCCCCATGGATCGCGTGAGTATATAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU327806 lncRNA upstream 7515 67510763 ~ 67510991 (+) True G289130
TU327786 lncRNA upstream 63939 67454278 ~ 67454567 (+) True G289111
TU327781 lncRNA upstream 81905 67436309 ~ 67436601 (+) True G289106
TU327779 lncRNA upstream 82489 67434519 ~ 67436017 (+) True G289104
TU327717 lncRNA upstream 89003 67411665 ~ 67429503 (+) True G289043
TU327813 lncRNA downstream 2085 67520884 ~ 67521229 (+) True G289136
TU327814 lncRNA downstream 2752 67521551 ~ 67521752 (+) True LOC118964316
TU327817 lncRNA downstream 3304 67522103 ~ 67526207 (+) False G289138
TU327818 lncRNA downstream 3304 67522103 ~ 67526207 (+) False G289138
TU327815 lncRNA downstream 5805 67524604 ~ 67526207 (+) True G289138
XM_036975001.1 mRNA upstream 14282 67461512 ~ 67504224 (+) False LOC110520450
XR_002470759.2 mRNA downstream 571 67519370 ~ 67520162 (+) False LOC110505416
XR_005051361.1 mRNA downstream 2759 67521558 ~ 67522717 (+) False LOC118964316
XM_036975008.1 mRNA downstream 81102 67599901 ~ 67603232 (+) True LOC110504522
XM_036965127.1 mRNA downstream 208094 67726893 ~ 67734046 (+) False LOC118936465
XR_002472983.2 mRNA downstream 362617 67881416 ~ 67886396 (+) False LOC110520459
TU327792 other upstream 39577 67474973 ~ 67478929 (+) True G289116
TU327715 other upstream 108956 67407322 ~ 67409550 (+) True LOC110520448
TU327725 other upstream 115140 67397957 ~ 67403366 (+) False LOC110520448
TU327305 other upstream 524375 66993171 ~ 66994131 (+) True G288674
TU327020 other upstream 733720 66783373 ~ 66784786 (+) True LOC110505407
TU327812 other downstream 527 67519326 ~ 67519970 (+) True LOC110505416
TU328193 other downstream 106554 67625353 ~ 67632210 (+) False G289455
TU328195 other downstream 106554 67625353 ~ 67632210 (+) True G289455
TU328233 other downstream 160063 67678862 ~ 67682122 (+) False G289486
TU328273 other downstream 242938 67761737 ~ 67762423 (+) True G289517

Expression Profile