RNA id: TU327817


Basic Information

Item Value
RNA id TU327817
length 1410
lncRNA type read_through
GC content 0.43
exon number 2
gene id G289138
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 67522103 ~ 67526207 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATAAATCCCTTTTTAAAAAGGTTCTAAAATGAATGATTCTGAGTGGGTAAACACATACTCTCATACACACCATACATTTTGGTACCCTTGGTTAATGAGCACTATGTACATGAAGTGCTTGGTTTTCCCCTGAGGAGAAGATTGCAGTTTGCTGTGAAGCATTTTGGTTCACTCTCAAAAAAAAACAAAGCCAGAACATTTCAGAAAGtcaatatacagtatctataaaCCCAGTCATTTACACAGTGCTGTGCATAAAGTAATAACCAGCTAAATGCAGTGTATCTACAGACATAAAAGCACATCGCTCTGTGCATAGTACTGTCGCAGAAAGTACATTTATGATTAGAATTGGTAACATTTTAGGCATTATAATATCACCAGATTATTTCAATATTATTAAGATTTACTTTGTAAAGTAAAACTTTCTTCctcttagtcatttagcagacgctcttatccaaggtgtgtgtatacattttcatactggtcccccatgggaatggAACCCAGAAACCTGgtgttacaagcaccatgctctaccaactgagccacacaggactgaCTATCTTAACCAGTTGAAGCAGTACCACACAGGACGCCTATTGCCCTGGGTGTGGTTTCAAAGCCAGTTATCCACTTTGAGAGTGACGCTACCTTTGTACATTTAGACCAGGGACAGGCAAACTCTGGCCCACATGACCATTCAATCCAGCCCACGGGAGGTACAAAATAATCAAATAGATGTGGGGGGGAATTATAATTTTGGTTAACATAAACACTCCAGGCCACACTTGAATGTCTAAAACTAGATTGAACATTATAATGGACCTATTTGATTtgatggcctaccccagacaacgctgagccaattatgcgccaccctatgggactcccaaccacaGCCAGTTGTAattcagcctggaatcgaacaagggtctgtagtgacatctctagcactgagatgctgtgccacTAGGGAGCCCAATGGGTTATTTATAATGGACCCATTTACAATGGACCTATTTTCTGGCCCGCAAATTGATTAACAATAATGTATAGATAAAATAAGCCCCCCAAAATCTGTACGGCCCTTCATCGAATTTCTAAATCCCGATATGGCCCTCAAGCCAAAAAGTTTGCCCACCCCTGGCTTAAACAATGAGGTATCCTAACATACTAAATACTCTAATATGCGGGCTAATGCTAGGCTAGGGCTGGAGAGTGGATGTCTGGTGGGATGTAAACAGGGTGGCTGGTAACAGTGAGAGTGTGGAAGCCTCAGGGGTCGGCCATGCCCTCTGTGCGGTTGCAGAGCGACTCATAGAGTTCAGAGGTCAGTGAGTAGTTAGAGAAGGCCTGCTTGAATTCCTGCAGGGGGCAGTAGACTCCACTACAGCCTGGAATCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU327814 lncRNA upstream 351 67521551 ~ 67521752 (+) True LOC118964316
TU327813 lncRNA upstream 874 67520884 ~ 67521229 (+) True G289136
TU327810 lncRNA upstream 3304 67518506 ~ 67518799 (+) True G289134
TU327806 lncRNA upstream 11112 67510763 ~ 67510991 (+) True G289130
TU327786 lncRNA upstream 67536 67454278 ~ 67454567 (+) True G289111
TU327823 lncRNA downstream 2896 67529103 ~ 67532651 (+) True G289142
TU327826 lncRNA downstream 5143 67531350 ~ 67532244 (+) True G289144
TU327835 lncRNA downstream 17012 67543219 ~ 67543418 (+) True G289153
TU327838 lncRNA downstream 19404 67545611 ~ 67545929 (+) True G289156
TU328157 lncRNA downstream 70191 67596398 ~ 67596602 (+) True G289428
XR_002470759.2 mRNA upstream 1941 67519370 ~ 67520162 (+) False LOC110505416
XM_036975002.1 mRNA upstream 17879 67461512 ~ 67504224 (+) False LOC110520450
XM_036975008.1 mRNA downstream 73694 67599901 ~ 67603232 (+) True LOC110504522
XM_036965127.1 mRNA downstream 200686 67726893 ~ 67734046 (+) False LOC118936465
XR_002472983.2 mRNA downstream 355209 67881416 ~ 67886396 (+) False LOC110520459
XR_002472984.2 mRNA downstream 355209 67881416 ~ 67886396 (+) False LOC110520459
XR_005051362.1 mRNA downstream 355210 67881417 ~ 67887339 (+) False LOC110520459
TU327812 other upstream 2133 67519326 ~ 67519970 (+) True LOC110505416
TU327792 other upstream 43174 67474973 ~ 67478929 (+) True G289116
TU327715 other upstream 112553 67407322 ~ 67409550 (+) True LOC110520448
TU327725 other upstream 118737 67397957 ~ 67403366 (+) False LOC110520448
TU327305 other upstream 527972 66993171 ~ 66994131 (+) True G288674
TU328193 other downstream 99146 67625353 ~ 67632210 (+) False G289455
TU328195 other downstream 99146 67625353 ~ 67632210 (+) True G289455
TU328233 other downstream 152655 67678862 ~ 67682122 (+) False G289486
TU328273 other downstream 235530 67761737 ~ 67762423 (+) True G289517
TU328723 other downstream 697518 68223725 ~ 68225306 (+) False G289883

Expression Profile