RNA id: TU328233


Basic Information

Item Value
RNA id TU328233
length 3228
RNA type TUCP
GC content 0.39
exon number 2
gene id G289486
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 67678862 ~ 67682122 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gttcaaatcaaattttattggtcacatacaaatgtttaccagatgttattgcgggtgtagcgaaatgcttgtaaattCGAcatatttgatttgatagagagagacattgagagagacaGCGAGTGAAAGAGAGACATCGAGGTGGTTACAGCTACTGCAGATATAGAATGTAAATAGacctacactcacacacccatACCAAGGCAGATATATGACACCCATAACAATGACTCTACAGTCTCTGAGCAGTAGGTGGAACTTAAAACCTTTTAAGGATTAGCCCCTTTTTtcaaattttcgcctaaaatgacatacccaaatctaactgcctatagctcaggccctgaagcaaggatatgcatattcttggtaccatttgaaaggaaacactcatGGAAATATGAAAGGAATGTAGTAAAATATAACAATAGGTCTGGAAAAAAGATAAAACAAAGAAAAAATCAACTGttcttttttttgtaccatcataattttttgtaccatcataattttttgtaccatcatcattttttgtaccatcatcattttttgtaccatcatcattttttgtaccatcatcatTTTTTGTACGATCATAATTTTTTGTACGATCATAATTTTTTGAACCATCATCATTTTTTTAACCATCATCTAAAGGCCATAATGTAAGAGTAGACAGTCACCAAtgatcaatgtggaactatacATGAAAGaacaacccaaacacacacagcccGTCATGTGAAACTTATCCAAATGCTCATGTTACATGATCAACACACTTTAAATAAACCCTTTCATGTTTTCTATCTGGTCAATTGCAATATACATCATTAGTAGCTACACATTTACTGTACTGGAGGTATGGGCAATCAAGTTTTAACAGGTTTTAGCTCACCATGATGAGAGGTACATGCATCTCAGGATTTAAGTCTCACACACACCCAAAATCTGTTTTTCAGCTTCACCAGTTCCACTGAAAAGTATTCACAGCCCAGTGATTATGCCGTTAAGGAATGCTGGATATAGTGGTGTATTCTTTATATTTCAGCGtttgttgcaccattagggaaaCTATGGGTGCTTCTCCTGTTTACTGCTTGAGAAAGAGgatacactcttagaaataaaGATTCTAAGTACAAAGACATAGGGTTCGTGTCCCCacaagtcattaaaactcgtttttaaaccactccacaaatttcttgtgaacaaactatagttatggcaagttggttaggacatctactttgtgcatgacacaagtaattttttacaacaattgtttatggacagatgatttcacttataattcactgtatcacaattccagtgggtcagacgaaTGAaaacgctaagttgactgtgcctttaaacaacttggaaaattccagaagatgacgtcatgcctttagaagcttcgattaggctaattgacatcatttgagtcaattggaggtgtacctgtggatgtatttcaaggcataccttcaaactcagtacctctttgcttgacatcatgggaaaatctaaagaaatcagacaattgtagacctccacaagtctggttcattcttgggagcaatttccaaacgcctgaaggtaccacgttgatCCGTACAAACAAACGTGTGCAAgtaaaaacaccatgggacaacgcagctgtcacaccgctcaggaaggagacgtgttctgtctcctagagatgaacgtaaagtgcaaatcaatcccagaacaacagcaaaggaccttgtgaagattctggaggaaacaggtacaaaagtatctatatccacagtaaaacgagtcctatatcgacataacctgaaaggccactcaacaacagggaagccactgctccaaaaccaccatataaaagccagactacggtttgcaactgcacctgGGGATGAAGATCAcactttttggaggaatgtcctctggtctgatgaaacaaaactagaactgtttagccataatgaccatcattctgtttggaagaaaaagggggaggcttgcaagccgaagaacaccatccaaaccgtgaagaatgggggtggcagcatcatattgtgggggtgctttgctgcaggagggactggtgcacttcacaaaatagatctcATCATTTAGCAGGAAAATgttgttgatatattgaagcaacatctcaagacatcagtcaggaagttaaatcttgatTGCAAATGGGTcctcaaatggacaatgaccccaagcatacttccttCCAAAGTTgtcgcaaaatggcttaaggacaacaaagtcaaggtatttgagtgtccatcacaaagccacAAATTTGCAGGCAGAACTgcaaaagtgtgtgcgagcaaggaggccaacaaacctgactcagttacaccagctctgtcagggggaatgggccaaaattcccccaacttattgtgggaagcttgtggaaggctacccaaaacgtttgacccaagttaaacaattgaaaggcaatgctactatacactaattgagtgtatgtaaacttctgacccactgggaatgtgatgaaagaaataaaagctgaaataaacacacaattctctctactattattctcacatttcacattcttaaaataaagggatcctaactgacgtaaAACAGGAAAATGTTtgctgggattaaatgtcaggaattttgaaaaaattagtttaaatgtacttggctaaggtgcatgtaaacttctgacttcaactgtatatagagtGTGTTAACAGGGTTTTAGGCCACCACGACCTGCCAggacagcttcaatgcgccttcgCATCGATACTAAGAATGGACTTAGTGCTCAGAGTAACAGCATATTAATAAATGTAGGAACTTGGCCGGAGGCTTAGCTACTAGCATTCAGTCCAGAAACAGTGACTTATTTGAGAGAAAGAGTTTCAATGTCCGTTATCTGATATCTCTTTGTCTTGATAGTTATTTTTACAGTTTTTTGTTTTCATCAATCTCTCTGTATCACCCCTCTGTCACTGGTTACACATTCCAAAGGGAAACTTCCCATCTCCGGGGAACAGAGTAATGTGAGGGAGTCATGTTTTTGCTGTGTATGCACTGTACTTTTGAATTCTATGTGTTCTTTTGTATTTACTGCTAGCCTTCTGGCCAGGTCTCCCTTTTCTGAACCCAAATGGGACTTtctggctaaataaaggttaaataaaaaatattataaaaGTAGCAATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU328219 lncRNA upstream 14653 67660853 ~ 67664209 (+) True G289476
TU328196 lncRNA upstream 45467 67627013 ~ 67633395 (+) False G289456
TU328197 lncRNA upstream 45467 67627013 ~ 67633395 (+) True G289456
TU328185 lncRNA upstream 50186 67622524 ~ 67628676 (+) True G289452
TU328157 lncRNA upstream 82260 67596398 ~ 67596602 (+) True G289428
TU328179 lncRNA downstream 45167 67727289 ~ 67733804 (+) False LOC118936465
TU328180 lncRNA downstream 45167 67727289 ~ 67728439 (+) True LOC118936465
TU328283 lncRNA downstream 97547 67779669 ~ 67874790 (+) False G289521
TU328285 lncRNA downstream 99811 67781933 ~ 67782280 (+) False G289522
TU328286 lncRNA downstream 99811 67781933 ~ 67782612 (+) True G289522
XM_036975008.1 mRNA upstream 75630 67599901 ~ 67603232 (+) True LOC110504522
XR_005051361.1 mRNA upstream 156145 67521558 ~ 67522717 (+) False LOC118964316
XR_002470759.2 mRNA upstream 158700 67519370 ~ 67520162 (+) False LOC110505416
XM_036975005.1 mRNA upstream 174638 67461512 ~ 67504224 (+) False LOC110520450
XM_036965127.1 mRNA downstream 44771 67726893 ~ 67734046 (+) False LOC118936465
XR_002472983.2 mRNA downstream 199294 67881416 ~ 67886396 (+) False LOC110520459
XR_002472984.2 mRNA downstream 199294 67881416 ~ 67886396 (+) False LOC110520459
XR_005051362.1 mRNA downstream 199295 67881417 ~ 67887339 (+) False LOC110520459
XR_002472982.2 mRNA downstream 199297 67881419 ~ 67886396 (+) False LOC110520459
TU328193 other upstream 46652 67625353 ~ 67632210 (+) False G289455
TU328195 other upstream 46652 67625353 ~ 67632210 (+) True G289455
TU327812 other upstream 158892 67519326 ~ 67519970 (+) True LOC110505416
TU327792 other upstream 199933 67474973 ~ 67478929 (+) True G289116
TU327715 other upstream 269312 67407322 ~ 67409550 (+) True LOC110520448
TU328273 other downstream 79615 67761737 ~ 67762423 (+) True G289517
TU328723 other downstream 541603 68223725 ~ 68225306 (+) False G289883
TU330151 other downstream 1944221 69626343 ~ 69630369 (+) True LOC110520478
TU330321 other downstream 2013273 69695395 ~ 69695836 (+) True G291327
TU330385 other downstream 2179938 69862060 ~ 69870212 (+) True LOC110520485

Expression Profile