RNA id: TU328451


Basic Information

Item Value
RNA id TU328451
length 1237
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G289652
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 67678862 ~ 67680167 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

attacttgtgtcatgcacaaagtagatgtcctaaccaacttgccataactatagtttgttcacaagaaatttgtggagtggtttaaaaacgagttttaatgacttgtGGGGACACGAACCCTATGTCTTTGTACTTAGAATCtttatttctaagagtgtatcCTCTTTCTCAAGCAGTAAACAGGAGAAGCACCCATAGtttccctaatggtgcaacaaaCGCTGAAATATAAAGAATACACCACTATATCCAGCATTCCTTAACGGCATAATCACTGGGCTGTGAATACTTTTCAGTGGAACTGGTGAAGCTGAAAAACAGATTTTGGGTGTGTGTGAGACTTAAATCCTGAGATGCATGTACCTCTCATCATGGTGAGCTAAAACCTGTTAAAACTTGATTGCCCATACCTCCAGTACAGTAAATGTGTAGCTACTAATGATGTATATTGCAATTGACCAGATAGAAAACATGAAAGGGTTTATTTAAAGTGTGTTGATCATGTAACATGAGCATTTGGATAAGTTTCACATGACgggctgtgtgtgtttgggttgttCTTTCATgtatagttccacattgatcaTTGGTGACTGTCTACTCTTACATTATGGCCTTTAGATGATGGTTAAAAAAATGATGATGGTTCAAAAAATTATGATCGTACAAAAAATTATGATCGTACAAAAAatgatgatggtacaaaaaatgatgatggtacaaaaaatgatgatggtacaaaaaatgatgatggtacaaaaaaaagaaCAGTTGATTTTTTCTTTGTTTTATCTTTTTTCCAGACCTATTGTTATATTTTACTACATTCCTTTCATATTTCCatgagtgtttcctttcaaatggtaccaagaatatgcatatccttgcttcagggcctgagctataggcagttagatttgggtatgtcattttaggcgaaaatttgaAAAAAGGGGCTAATCCTTAAAAGGTTTTAAGTTCCACCTACTGCTCAGAGACTGTAGAGTCATTGTTATGGGTGTCATATATCTGCCTTGGTatgggtgtgtgagtgtaggtCTATTTACATTCTATATCTGCAGTAGCTGTAACCACCTCGATGTCTCTCTTTCACTCGCtgtctctctcaatgtctctctctatcaaatcaaatatgTCGaatttacaagcatttcgctacacccgcaataacatctggtaaacatttgtatgtgaccaataaaatttgatttgaac

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU328488 lncRNA downstream 47050 67625400 ~ 67631812 (-) False G289677
TU328490 lncRNA downstream 47050 67625400 ~ 67631812 (-) True G289677
TU328483 lncRNA downstream 47653 67624211 ~ 67631209 (-) False G289676
TU328432 lncRNA upstream 24867 67705034 ~ 67881378 (-) False G289649
TU328437 lncRNA upstream 24867 67705034 ~ 67820036 (-) False G289649
TU328439 lncRNA upstream 24867 67705034 ~ 67835185 (-) True G289649
TU328532 lncRNA upstream 73133 67753300 ~ 67808257 (-) True G289716
TU328471 lncRNA upstream 220623 67900790 ~ 67915943 (-) True LOC110520458
XM_021597782.2 mRNA downstream 42204 67617490 ~ 67636658 (-) True LOC110520453
XM_021597779.2 mRNA downstream 110164 67545597 ~ 67568698 (-) True LOC110520452
XM_021597780.2 mRNA downstream 126843 67545597 ~ 67552019 (-) False LOC110520452
XM_021597777.2 mRNA downstream 136533 67524601 ~ 67542329 (-) False LOC110520451
XM_036975013.1 mRNA upstream 4883 67685050 ~ 67706221 (-) False LOC110520454
XM_036975014.1 mRNA upstream 4883 67685050 ~ 67706221 (-) False LOC110520454
XM_036975015.1 mRNA upstream 4883 67685050 ~ 67706221 (-) True LOC110520454
XM_036965132.1 mRNA upstream 96244 67776411 ~ 67786849 (-) True LOC118944713
XM_036975011.1 mRNA upstream 156538 67836705 ~ 67881414 (-) False LOC110520455
TU328494 other downstream 45369 67626832 ~ 67633493 (-) True G289678
TU327202 other downstream 835981 66842671 ~ 66842881 (-) True G288578
TU325523 other downstream 2098367 65579791 ~ 65580495 (-) True G287112
TU325443 other downstream 2231579 65446825 ~ 65447283 (-) True G287042
TU325373 other downstream 2378445 65298207 ~ 65300417 (-) True G286985
TU328453 other upstream 203585 67883752 ~ 67886232 (-) True G289653
TU328904 other upstream 526423 68206590 ~ 68208395 (-) True si:ch211-214p13.7
TU329440 other upstream 898936 68579103 ~ 68580707 (-) True G290542
TU329467 other upstream 946165 68626332 ~ 68647620 (-) True G290567
TU329515 other upstream 1030200 68710367 ~ 68717385 (-) True G290598

Expression Profile