RNA id: TU328335


Basic Information

Item Value
RNA id TU328335
length 1169
lncRNA type antisense_over
GC content 0.41
exon number 4
gene id G289563
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 67900738 ~ 67916438 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTACAGCACGCTGAAGACGTCCCAGTCAAACGGAGATGCATAAAGTGTCGGTCTGAAGTGAGCTTCACCGGGCCAGTCCCGTTAGTTCTCTTATATACTGCtcacacagacaagttatatttgcatggtTTGGCTTATTCATTATTCATCATTAATTCATCATTAACGTTTGGTTCATgcatgtgactgaccaataccTTAAGAGGCTTCCTCTctccaagctgagaccttgaaactaaGATATCCCTTTAGTTCTCAAAACACGGTTCTGggtgtactgccaaattgcatactgatagtgaggattcctcCTCTGCAtgttcaatcagtcacttgcatgagcacagaaattggttattagaaaaacACAAACAGAAAATGTTCCATCACAGTATCACTAACTAGACACAACAAGCTGAAACGAACCACCTAAGATTCCCACATAGCAGCTTCTTGTCAATGTTGCTAGTTATCTGGTCATCCAGAACCACAACTACACATGGACTTCTTCCTCATTGAAGCATGTGCTTTGTTGTCGTGACCTTGTCAGCTAACCCGTCTATGATACTTGACTCTTTTTTGGCATGTTAAGTAACTGCTGTGTGATTACTACAGTCCATAGACTGAGTTGAGTCTTTCAAAGTATTGACTGCACTGGTGTTGTTCTCTTCTGGCAGTGTGACCATCAGACTGTGCATTGCTCTCCTCTCCGTGCTTATCACAATGACTTTTCTGTTCCTGTTTTCGTTTCCTACACAGCCAGACCATACAACAGATGTTAATGCAGAGAACCCCTCCTCCAATAGCAGATGGAATTGTGAAGAGCAATAACCTCCGTAGGTTATATTCAGCATGACCTGTGAGGTTATTAGTGATGGTCAAATTCCACTCCATTTTCCATACACCACGTTGATCATCTGTTATTTGACAGCTGTAGCTCCCGGTGTCATTTAACTCTACATTAAAGATAGTCAGCTTTGTAGGTGGATCAACACTCATCCTGTCAGAGGTGATGTTCCTTTCAGTTTTATTCAGTTTGTCACTATGAGAGAAAATAAGAACTGTATCCTTCTTCCAGATGTATGATGCATTCGTCTCTGAGTTATTGCAAACCAAAGTAACAATTTCTCCCAAAGAAGCTGATTTATTTTTCTGATATTTTGTTGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU328256 lncRNA upstream 16918 67882290 ~ 67883820 (+) True LOC110520459
TU328255 lncRNA upstream 17116 67882290 ~ 67883622 (+) False LOC110520459
TU328258 lncRNA upstream 18507 67881422 ~ 67882231 (+) False LOC110520459
TU328279 lncRNA upstream 25948 67872793 ~ 67874790 (+) True G289521
TU328314 lncRNA upstream 64710 67827434 ~ 67836028 (+) True G289544
TU328345 lncRNA downstream 3261 67919699 ~ 67919965 (+) True G289572
TU328347 lncRNA downstream 7891 67924329 ~ 67924593 (+) True G289574
TU328351 lncRNA downstream 11241 67927679 ~ 67927935 (+) True G289578
TU328358 lncRNA downstream 24344 67940782 ~ 67940983 (+) True G289585
TU328359 lncRNA downstream 25507 67941945 ~ 67942180 (+) True G289586
XR_005051362.1 mRNA upstream 13399 67881417 ~ 67887339 (+) False LOC110520459
XR_002472983.2 mRNA upstream 14342 67881416 ~ 67886396 (+) False LOC110520459
XR_002472984.2 mRNA upstream 14342 67881416 ~ 67886396 (+) False LOC110520459
XR_002472982.2 mRNA upstream 14342 67881419 ~ 67886396 (+) False LOC110520459
XM_036965127.1 mRNA upstream 166692 67726893 ~ 67734046 (+) False LOC118936465
XM_036975016.1 mRNA downstream 28440 67944878 ~ 67980956 (+) True LOC110520461
XM_021597797.2 mRNA downstream 65893 67982331 ~ 67989941 (+) True lrrc58b
XM_021597798.2 mRNA downstream 85867 68002305 ~ 68037956 (+) True LOC110520463
XM_036975017.1 mRNA downstream 141677 68058115 ~ 68114677 (+) False LOC110504531
XM_036975018.1 mRNA downstream 141677 68058115 ~ 68114677 (+) True LOC110504531
TU328273 other upstream 138315 67761737 ~ 67762423 (+) True G289517
TU328233 other upstream 218616 67678862 ~ 67682122 (+) False G289486
TU328193 other upstream 268528 67625353 ~ 67632210 (+) False G289455
TU328195 other upstream 268528 67625353 ~ 67632210 (+) True G289455
TU327812 other upstream 380768 67519326 ~ 67519970 (+) True LOC110505416
TU328723 other downstream 307287 68223725 ~ 68225306 (+) False G289883
TU330151 other downstream 1709905 69626343 ~ 69630369 (+) True LOC110520478
TU330321 other downstream 1778957 69695395 ~ 69695836 (+) True G291327
TU330385 other downstream 1945622 69862060 ~ 69870212 (+) True LOC110520485
TU330486 other downstream 2002744 69919182 ~ 69922119 (+) True LOC110504602

Expression Profile