RNA id: TU328576


Basic Information

Item Value
RNA id TU328576
length 449
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G289759
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 67931343 ~ 67931791 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cataattagagcagtaaaaaaatggttttgtcatacccagccaatcagcatccagggctcgaaccacccagtttataattttgTTTGTAGCATGGCTATAATAGGTTTGTTGATGCTTGTCCAGTCAGACATACATCATAATAATAGTGATCAACAgtaattcctcaaacatacatgtatcttataccgttttaaagctattcttgttgttaatcccaccacagtgtccaatttcaaataggatttacggcgaaagcaccacaaacgattatgttaggtcaccaccaagccacagaaaaacacagccattttcccagccaaagagaggagtcacaaaaagcacaaatagagataaaattaatcactaacctttgatgatcttcatcagatgacactcataggacttcatgttacacaatacatgtatgttttgtttgataaagttcata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU328574 lncRNA downstream 1670 67929471 ~ 67929673 (-) True G289757
TU328571 lncRNA downstream 7176 67923932 ~ 67924167 (-) True G289754
TU328471 lncRNA downstream 15400 67900790 ~ 67915943 (-) True LOC110520458
TU328439 lncRNA downstream 96158 67705034 ~ 67835185 (-) True G289649
TU328437 lncRNA downstream 111307 67705034 ~ 67820036 (-) False G289649
TU328584 lncRNA upstream 8985 67940776 ~ 67940975 (-) True G289767
TU328585 lncRNA upstream 10259 67942050 ~ 67942284 (-) True G289768
TU328586 lncRNA upstream 11246 67943037 ~ 67943299 (-) True G289769
TU328587 lncRNA upstream 12319 67944110 ~ 67944328 (-) True G289770
TU328594 lncRNA upstream 46629 67978420 ~ 67979175 (-) True G289777
XM_021597794.2 mRNA downstream 14485 67900356 ~ 67916858 (-) False LOC110520458
XM_036975012.1 mRNA downstream 49925 67870915 ~ 67881418 (-) True LOC110520455
XM_036975011.1 mRNA downstream 49929 67836705 ~ 67881414 (-) False LOC110520455
XM_036963363.1 mRNA upstream 193812 68125603 ~ 68147765 (-) False nr1i2
XM_036963368.1 mRNA upstream 193812 68125603 ~ 68147765 (-) False nr1i2
NM_001124672.1 mRNA upstream 196549 68128340 ~ 68144764 (-) True nr1i2
XM_036975020.1 mRNA upstream 274539 68206330 ~ 68208663 (-) False si:ch211-214p13.7
XM_036975019.1 mRNA upstream 274539 68206330 ~ 68208674 (-) False si:ch211-214p13.7
TU328453 other downstream 45111 67883752 ~ 67886232 (-) True G289653
TU328494 other downstream 297850 67626832 ~ 67633493 (-) True G289678
TU327202 other downstream 1088462 66842671 ~ 66842881 (-) True G288578
TU325523 other downstream 2350848 65579791 ~ 65580495 (-) True G287112
TU325443 other downstream 2484060 65446825 ~ 65447283 (-) True G287042
TU328904 other upstream 274799 68206590 ~ 68208395 (-) True si:ch211-214p13.7
TU329440 other upstream 647312 68579103 ~ 68580707 (-) True G290542
TU329467 other upstream 694541 68626332 ~ 68647620 (-) True G290567
TU329515 other upstream 778576 68710367 ~ 68717385 (-) True G290598
TU329520 other upstream 790017 68721808 ~ 68724914 (-) True G290602

Expression Profile