RNA id: TCONS_00030311


Basic Information

Item Value
RNA id TCONS_00030311
length 8407
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id XLOC_014953
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 37522577 ~ 37569033 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTGTTGATTTTGTCTCTTTCTTTCTGGATTTGAGCAGTCATTTCCTCCACTCTCTGTCTATCATGTTGTGTCTCTAGTTTGATCTTCTCAATCTCCTCTGCTTTTCTTTTCAGCTCAGTTTTCATCTGTTTCAACACTTCTCTCTCATTCTCAAATGCTTCTCTGTCAAGTTTTAGACTCTCTGCATCTCTGTCTAAACTTATTATTTTATGTTGCAGATCTTCAACAATCTTGATTATTGCAGCTCTCTCACTTTCAATGTTGCTCTTTTCCTTttctatttctctttgttgtttaTGAATCTCTGCTTGAAGTTGCCCGAGTTCATCTTCTCTGAGTCTCAAGTTCTCTTTCTTGTTTTTAACATCTTCTGTTTGTTTAGAGATGTTCTCTCTCATTTCCTCAAAATTGCTCTTTTCTTTTTGCAGTTCTGCCATTAAAGACTCGTTTGCAACTTTTATTTCATCCAGAATCTCCTGCTCTTTCTTTGTATCTTCAGCAAGATGAGTAAAACTTTCCTTCTCTCTTTTAAGTTCTTCAGTCATCTTCTCCAAACTCTGTCTTTCATTTTGAATCTCTTCTTTTATCTTTCTGATTTCACCAGCTTCTCTTTCCAGCTCAATCTTCATCTGTTCTAACTTGTTCTTTTCTTCTTCAAACACTTGTTTCTGCAGCTTCATCATCTTCAGGTCTTCATCCAGACTGTTCCTGCCTTGGTCGAAGTCatgtttttctttctctatttccCGTTTCTGTTCTTCCATCTCTTCTTTATCTTTATCTAATTGTTTTCTCTCATTCTTCATTGTTTCAATAATGTCATTCATGTTTGTCTGTTGTTTGTCTAGCTCAGATTGTTTCAGATCAAGCTCACTTCTGTCCTTCATGAtaatctctttttctttttctagttCTTGTTGCAGATTCTGAATTTCAGTTTTCAGTTGATCAAGTTcatcttgtttttgtttcatttgtttttcttgatATTTAATGTCATGTATTTCTCTTGTGATGTTGTCATTCATCTTCTGTAGATATTCTCTATCTTTCTGGATTTGAGCAGTCATTTCCTCCACTCTCTGTCTTTCATGTTGTGTCTCTAGTTTGATCTTCTCAATCTCTTCTGCTTCTCCTTGCAGGTCAGTTTTCATCTGTTTCAACACTTCCTTCTCATTCTCCAACAATTCTCTATCTTGTTTTAGACTCTCTGAATCACTTTCTATAATCAATAGTTTCTGTTGCAGATTTTCCACATCTTTCTTCAGTAGTTTTCTGTCACTCTCCAGTAATTCCTTTTCAGTCAATACCTCTTTCATCTGGATCTCAACATCTTCAGACTGCTTTGTCAGCTCAGTCATCAAGTCCTGGTTTTTCTTGGTCATTGCTGCTCTTTCATTTTCAATGATGCTCTTTTTGGTGTCCATTTCAGTTTGTTGTCTGTTAATCTCTGCTTGCATTTGCTGAAGTTTATCTTCTCTGAGtatcattttctttttctcactgtcaatcatttcattttgtttgaaCATGCTTTCTCTCATTTGCTCAAGATTGCATTTCTCTTTTTGTATATCTGCTAATGCAGACTCATGTAACACTTTCATTTCATCATCCTTTCTCTTTGTATCTTCAGCAAGATGAGCAAGATCGTCTTTCTCTTTTTCAAGATTTTCTGCCATCTTTTCCAAACTCTGTCTTTCATTTCTTGTCTTTTCTTTTAGCTTTTTGATATCATCAGCTTCTCTTTGCAGCTCAATTTTCATCTGTTGTAACTTGTTCTTCTCTTCTTGAATTGCTTGTTTGTGATATTTAAGCTCTTTCATTTCTACCTCCAAAGCTGTTCTCTTTTGGTCCATTTCTTTCTCGTATGTGTTCAGCATTTGGGTTCGTTCTTCAATTAATCCCCTTTCCTTATTCAGTTCAATATCCATCTGATGTTTTTGAGCTATCATTTCAGACTTCTCTTTCTCGAGATTTGCCCTGTCTTTAGAAGCATACTCCATCATTTGATTGACTTCTCTCTGCAGTCGGTCTATTTCAGTTTTCTGTCCTTcaagtctgtatttttcatttataatcGCCTTTCTATTGGCTTCTATTTCATCTTGCTGTCTGTAAATCAAAGCTTGGAGTTGCTCAAGTTCAACCTCTCTCAGTCTCAGTTGTTCGGTCTTATTCACTATGTCAACCTGTTGCTCTGAAATACCCTGTTTTAGCAGATAAAGCATGTCTTTTTCTGCCTGTATTTCTGCCTGTTTGACcttgtttttctctctttcttcaaGAAGCTGGTTTTCCAGATCCTCCTTGGCTCCTGCTATATCTGTCACCGTTTTCTTCAGCTCAATCAGAACTCTTTCCTGCATCTGTTTATTAGACTCATTTGCCTTCCTTTGCATTTCTGTTTCTATCTGCATGTTTTCTAGAACCACTTGTTTCCTCCCAAGTTCCTCAGCAAGACTCTCCACATTTTCCCTGTCTTTCTTAAGTTTTGTGCCTGCTTCTTCAAGGTTCTGTCTTTCATTTTGTAATTCTAGTTTTGTCTTTTCTGCTTCTTTTTTTAGCTCAGCTTTTATTTGCTCGATCTTATCTCTCTCATCCTCAATGATTTTCTTCTGAAGTTCGTTGTTCTCCTGCTCTTTAGCCAAATTTTGCCTTGTTTTTTCCAGTTCATCCATTTCTTGCTTTATCCTTGTCCTGGTGTTGTCAATTCCTTCCCTTTCACTCTGCTCTTTCAGATCTTCACTCAAACTGATGTCTGCTTTTTCCTTCTCAAAacaatctctctctttttctaGATCTTCTTTCTGTTTTGATAAGTTTATTTTCAACTGCTCAAGAATCTCCCTCTCTTTCTGTATCTCCACCAGTTGTATTTCATGTTGTCTAATCTGAGATTCAAGTTGTTTTTTAAGATTTCCCATCTCTGTCTTTGTTTTCTCCAGGTCAAACCTTTCTTTTTCAAGAGTGTCTCTATCAGATTCAAGCCTTTGTTTTTGTACTTCTAAATTTGCTTCCTCATCTCTGATCCTGTCAGTTGATGTCTCTAtatctttcttttcattttgaaGTTTGATCACCATTTCTTCATTATTCCGTCTGTCTTTTTCTATGTCTCGCCTTTGTTTTTCAGTATCTTCAGCTTCTTTTTGTAGCTCAGCTTTTATTTGCTCAATCTTGTCTCTCTCATCCTCAATGATTTGTTTCTGAAGTTCATTGTTCTCCAGTTCTTTAACCACATTAAGTCTGGTTTGTTTCAGTTCatccatttctttctttattcttaCCCTGGTCTTACCAATTCCTTCCCTTTCACTCTGCTCTTGCAGTTCTTCTCTTAAACTAATGTCTGCTTTTTCCTTCTCAAAacaatctctctctttttctaGATCTTCTTTCTGTTTTGATAAGGTCAATTTTAACTGCTCAAGAATCTCCCTCTCTTTCTGTATCTCCGCCAGTTGTATTTCATGTTGTCTATTCTGAGATTCAAGCTGTTTTTCAAGATCTTTCATCTCTGTGTTAGTTTTCTTCAGGTCAAACCTTTCTTTTTCAAGAGTGTCTCTATCAGATTCAAGCCTTTGTTTTAGTACTCTTAAATTTGCTTCCTCATCTCTGATCCTGTCAGTTGATGTCTCTAtatctttcttttcattttgaaGTTTGATCACCATTTCTTCATTATTCCGTCTATCATTTTCTATATCTTGTCTTTGTTTTTCAGTGTCTTTAGCTTCTTTTTGTAGCTCAGCTTTTATTTGCTCAATCTTATCTCTCTCATCCTCAATGATTTGTTTCTGAAGTTCATTGTTCTCCAGTTCTTTAACCACATTAAGTCTGGTTTGTTCCAGTTCATCCATTTCTTGCTTTATTCTTACCCTGGTCTTATCAATTCCTTCCTTTTCACTCTGCTCTTCCAGTTCTTCTCTTAAACTGATGTCTGCTTTTTCCTTCTCAAAacaatctctctctttttctaGATCTTCTTTCTGTTTTGATAAGTTTATTTTCAACTGCTCAAGAATCTCCCTCTCTTTCTGTATCTCCACCAGTTGTATTTCATGTTGTCTAGACTGAGATTCAAGCTGTTTTTCAAGATCTTTCATCTCTGTCTTAGTTTTCTCCAGGTCAAACCTTTCTTTTTCAAGAGTGTCTCTATCAGATTCAAGCCTTTGTTTTTGTACTCTTAGATTTGCTTCCTCATCTCTGATCCTGTCAGTTGATGTCTCTAtatctttcttttcattttgaaGTTTGATCACCATTTCTTCATTATTCCGTCTATCGTTATCTATGTCTCGCCTTTGTTTTTCAGTATCTTCAGCTTCTTTTTGAAGCTCAGCTTTCATTTTACCCAATCTCTGCATTTCTTTACCAATCATTTCTTTCTTATCATCTAAAGCCTCAAACTCTTCAGCTAAGAtggttttcttttctttaattttcTCTAGCTCTCTGTTCAGAATTTCTCTGCTGTTTTCAATATGATCTTGTTCTCTGAGAACTTCTTGTTTTATCAAATCTACACTTGCATTTTTCCTCTTCACTTCATTTTGCATCTCATTCACTCTTtgcttttcttttgttatttcaaCCTTTTCCTTTTCCAGTCTGTCCATTACATTCTCTAATTCTCTTTTTTGCTTTTCCATTTCAGCCTGTCTTTCATCAAGTTCATTCTGTTTTGCATTAAGCTGTGACATTTGCATGTTCTGTTCATTTTCTTGTAGTTTTAAACGGTCTTTCTCTTTTTTAACATAGCTTTCCTCTTGTGAGATCTTCAAATTCATTTGCACAAGAGCGCTTTTCTGTTTCTCTACCTCTGATAgatcagcatttattttttttctcacttcATCAAGCTCATCAGTTTTGCTTTTCTCCACTACTGGCTTTTGCGTTTCTAACATATATGTTTCAGTGTAGACGGCTGGCTTTTGTATTTCTagctctttcttttttctctcaatATTTTCCGCTTCTATCTGAAGCTCAGTTCTCATCTGCTGTATCTCTTTCTCAAACAATTGCCTCTGAAACTGCAAGTCTTCATATTCTTTATCcagtttttctttatattttttcattgctTCATTCTCCATTTCCAACGATTTCATGCGGCTTTCAAATAATTCCTTTTGctcatttacatgttttttttgtttctccACATTTTCATATTCTTCTCTCAAACTTTCCATTTCTTGTCTTTGTTCCTCCAGAGCTGTTGTTTCTCTGCCTCTTGCGGTCTTTACATATTCTGCTTTCTTCCGTTGTTGATCTTTATCGGCTTGCATCTGTTCAACTTGCACTTTTTCCATCCTTAATTTGTTCTGCAACTCAtctatttgtttctgtttatattCAGCCTCATTTTCTCTCAGTCCTAAATGTTCTTTTTCCAATTCAAAAATGGTTCTTTCTTTTGAGATGTTTTCACTCTGCAGCTCTAGATTGTCACTCTCTTTTTGTATCTCTGCTTGTATAAtgttattcttttctttttgtcgAGAAAATTCATCTTCATCTTCTCTAAGCTTTGATGTTTCCTGTTCGAGCTCATCTCTTTTAGACTCAACCTCCTGCCTCTCTTTGTCAACCTCCATTTGCATCTCATCAAGAGCTTTTGTCCTCTTTTCAATCTCTTCAACTAGTCTATCCATGTATTGCCTTTCTTTTTGAATTTGAACTTCCATGTCTTTTACATTCTGGATGTCTTTTTGAACAGCCTGTCTTTGATTTTCAACGATAGCTGCTTCTTTTTGCAGATCAGCCTTTAAATCCTTAAATGTTATTTCCTGCTTTTCTATACCAACTCTTATTTTGTCCACATCCTCCCTTTTTCTTTTTGTCTCTTCTGCAATATTCATAATCTCATCTCTTTCTTTCTGAAGTTCAACCGCAGCGTCCtctagtttttgtttttcagctaGAGTATCTATTCTTAGCTTCTCAGTATCTTCAGCTAATGTTTGTAGCACAGATTCAAGCTTGTCTTTCTCTTCTGCAATACTTTGTCTTTGCAGTTGCAtctcttctttctctctctccaaaTTGATTTTCATTTGCTCCAGATCTTGCATATCTCTCATTAAAGATATTCTGCAGTCTTCAAGAAGTCGCTTCTCATTTAGTACTTCTTTTTTCACAAGCTTCAGAGATTCTAGCTCTCTGTTTAATAGATGTGTCATGTCCCTCTCCATCTGCAGCTTCTGTTCAATTATAGCTGCCCTTTCTCTGTCAAGATTGTCTTTTTCATTTTGCGTGAACTGCATCATGTCACCAACCTGTTTTAGCTGTTCTGCAATTTCGTCTTGGCTTTTCTTAAGTTCACTTTTTTCCATGAAAACTGCATTCTGGATATCCTGCATTTCTTTTTGCTGTCTGTTAAGATCAGTCTGCATTTGCTGCAGGTCATATTCTCTTATTTTAATCTTACTCTTCTCATTCTCAATCTCATCTTTCTGTTGTGAATTGAGTTCACTTATTTTTTCAAGAACGTCGCTCTTTGTTTTGATCTGGTTCAGTGTCAGTTCATTCAATTCTCTCAAGTTTTCCAGATCTTTTATTTCTCTCGATCTCTCTGTTTGTAGTTGTTGCATGTCATGCCTTTTCTTTTCAAGTTCTTCCCATTCTTGTTTTAGCTTCTCTGCCCAATTTTCCATATTCTGTCTTTCATCATGCATGTTATGTTTTGATCTCTCAATATAGCCAGATTCTCTCTGCAGCTCATATTTCATGTTCTCCAATGCTCTCTTTTCATCCTCCATCATTTTCCGCTGAGCTTCCAGGTTCTCAAATTCTTTAGCTAAAGTGAATTTCAGATCAGCCTCCATGGTTTGCTTTTCTGTTTCTACATCCTGTCGAATGCGATTCAGAACATCTCTTGCTTTTTCTAATTCTATTCTTACCATCTCCTCTTTTTCTCTGCTTTCAGCAATTTGAGTCTGCAGGTCAACCCATCCTTTCTGTACTTCTAACTTCGTCCTTTCCATCTCATCTTTTGTTTGTTCCAGCTCTTGCTTTTGGAGCTCCAATTGTAACTCCATGTCTGCTGTGGTTTGCGTTGCTGTTTGTAGAGTAGCTTCTCTGAGAGAAAGTTCATCCCTGCTCAGTTCTATTTCTGCCATCTGTCTCTCCATTGTACATTTTTGAGCAAGCAGTTCTTGTTTGAAATATTCTAGAAATTGTCTTTGCTTATCAAGCTCCTCTATGGACAGTGCCATATCATATTCACTAGCATCTTCCATCAATTCAGTTTGGACTTGAGCATCAACTTGTTTAATTTCCAACGGTTTTTTGTATTCTAGTTTGCTTTTCTCACTTTGTAGATGTAGTTCCTTGATatccagttgttgttttctttcATTCAGTTGCTGGTTCTCATTCCATATTGCATCTAAACCTTTTTGGTTCTTTTCTTTCTCAGTCTGCAGCTGTCTTTCCCAGTTTTGTAGACTCACTCGTTTTGTTTTCATCTCTTTCTCCTCCTCATGCAGTTTGATCATTCTCTCTTCAGCGTCATTCTTTACTGCTTTTACATCTTCCTTTATCTTATTTAGttcatgtttctcttttaaaatgatttctttATAGTGTTCCAGTTCTTGTCTTTCTTTCTGTATACTTGCGCTGAGTTCAAGGTCACTTGCTCTATAACTTTTAATGGCTCCTGGTTCTTCTGTTTTGGCATACTCTGAGCTTTTGGTGGCAACGATGGCTGGTTGAACctgaaataaatgtttcttgTTTGCATTTGCATCTTGTTTCAATATTATGTATATAAACATACGCGTGAGACTCAGATGGAGGGCAGAAATTGATTCATCTACAAAGGAATCGCTATCAGAagacaaaaatgtttgttttgtgttgtttataattgtttaaattagcCAAATGATAAATGCCAAACAGTTTTTACAGGCTTTCAAAAGTTTTTTCCTTATAAGGGGGGAAACGTTCAAGAAATTGGCTTAAAACGAAAGAAAAGGCGGCATGTAATAAACATGTATTCAATATATTCATATGTACAAACTTGTTTTGAATGTGATAatttgtttgacagcactaataattattatatacaggcctagctatgtgtattatatgttaatgtgttatataaaaagataaaaaagatataaacaccaccacacttataCAAAGTCCAGAAGAACATATATAACGTACCCTGCCCTGCAATTGCTGCAATGAAATCTCTGTCTTGTTTTGTAAAAATCCATGATTTTACTGATGTAAAACTGTAACGTTAACATCAAGATGTGCAGCAGCCTTGAAAGTTTGATGGTAAGTTCATCGACCGAACAAAAAAGAAACGCTACCATTGCGAGCACTAGACGGTTAATATTGTGTAGCCCTGTTTACCAtacactaaaaatat

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00030307 lncRNA downstream 402249 36861576 ~ 37120328 (-) False XLOC_014949
TCONS_00030309 lncRNA downstream 423302 36987484 ~ 37099275 (-) True XLOC_014949
TCONS_00030308 lncRNA downstream 423307 36886296 ~ 37099270 (-) False XLOC_014949
TCONS_00030306 lncRNA downstream 584092 36861576 ~ 36938485 (-) False XLOC_014949
TCONS_00030305 lncRNA downstream 660526 36828951 ~ 36862051 (-) False XLOC_014949
TCONS_00030315 lncRNA upstream 33450 37567811 ~ 37569033 (-) True XLOC_014953
TCONS_00030316 lncRNA upstream 35263 37569624 ~ 37570928 (-) False XLOC_014954
TCONS_00030317 lncRNA upstream 35263 37569624 ~ 37571866 (-) True XLOC_014954
TCONS_00030318 lncRNA upstream 43491 37577852 ~ 37578715 (-) True XLOC_014955
TCONS_00030319 lncRNA upstream 788914 38323275 ~ 38372998 (-) True XLOC_014959
TCONS_00029491 mRNA downstream 14006 37501652 ~ 37508571 (-) True XLOC_014952
TCONS_00029489 mRNA downstream 368141 37153409 ~ 37154436 (-) True XLOC_014950
TCONS_00029488 mRNA downstream 881900 36503112 ~ 36640677 (-) True XLOC_014947
TCONS_00029486 mRNA downstream 1121295 36378302 ~ 36401282 (-) False XLOC_014947
TCONS_00029485 mRNA downstream 1288392 36217138 ~ 36234185 (-) False XLOC_014947
TCONS_00029495 mRNA upstream 852894 38387255 ~ 38419575 (-) True XLOC_014960
TCONS_00029498 mRNA upstream 939397 38473758 ~ 38539670 (-) False XLOC_014963
TCONS_00029499 mRNA upstream 940206 38474567 ~ 38611814 (-) False XLOC_014963
TCONS_00029501 mRNA upstream 973928 38508289 ~ 38517343 (-) True XLOC_014963
TCONS_00029502 mRNA upstream 1232252 38766613 ~ 38872650 (-) False XLOC_014965
TCONS_00029490 other downstream 294552 37227910 ~ 37228025 (-) True XLOC_014951
TCONS_00029481 other downstream 2056997 35462382 ~ 35465580 (-) True XLOC_014944
TCONS_00029473 other downstream 2093683 35421677 ~ 35428894 (-) True XLOC_014941
TCONS_00029472 other downstream 2101626 35420835 ~ 35420951 (-) True XLOC_014942
TCONS_00029451 other downstream 3426900 34092572 ~ 34095677 (-) True XLOC_014926
TCONS_00029492 other upstream 103013 37637374 ~ 37637493 (-) True XLOC_014956
TCONS_00029493 other upstream 494137 38028498 ~ 38028618 (-) True XLOC_014957
TCONS_00029494 other upstream 527639 38062000 ~ 38062124 (-) True XLOC_014958
TCONS_00029496 other upstream 929766 38464127 ~ 38464249 (-) True XLOC_014961
TCONS_00029497 other upstream 929934 38464295 ~ 38464413 (-) True XLOC_014962