RNA id: TU328618


Basic Information

Item Value
RNA id TU328618
length 445
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G289798
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 67992536 ~ 67992980 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atCTTCACTGGAGCGAAGAGGCCTAGCacaaactatgaaaaacagccccagaccattattcctcttccaccactatgcattcgggcaggtagggttcacctggcatccgccaaacccagattcggcTGTCATTCTGTGATCTTGTGTGgactaccacttcacggctgagccgttgttgctcctagatgtttccacttcacaataacagcacttacagttgaccggggcagctctagcagggcagacattttacaaactgacttgttggaaaggtggcatcctatgacggtgccatgttgagagtcactgagctcttcagtacgggccattctactgccaaagtTTGActgtggctgtgtgctcaattttatacacctgtcagcaacgggtgtggctgaaataggcaaatccactaatttgaaggggtgtccacatacttttatac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU328594 lncRNA downstream 13361 67978420 ~ 67979175 (-) True G289777
TU328587 lncRNA downstream 48208 67944110 ~ 67944328 (-) True G289770
TU328586 lncRNA downstream 49237 67943037 ~ 67943299 (-) True G289769
TU328585 lncRNA downstream 50252 67942050 ~ 67942284 (-) True G289768
TU328584 lncRNA downstream 51561 67940776 ~ 67940975 (-) True G289767
TU328643 lncRNA upstream 42598 68035578 ~ 68035800 (-) True G289823
TU328646 lncRNA upstream 45161 68038141 ~ 68038403 (-) True G289826
TU328655 lncRNA upstream 55387 68048367 ~ 68048654 (-) True G289835
TU328656 lncRNA upstream 57252 68050232 ~ 68050529 (-) True G289836
TU328661 lncRNA upstream 64005 68056985 ~ 68057285 (-) True G289841
XM_021597794.2 mRNA downstream 75678 67900356 ~ 67916858 (-) False LOC110520458
XM_036975012.1 mRNA downstream 111118 67870915 ~ 67881418 (-) True LOC110520455
XM_036975011.1 mRNA downstream 111122 67836705 ~ 67881414 (-) False LOC110520455
XM_036963363.1 mRNA upstream 132623 68125603 ~ 68147765 (-) False nr1i2
XM_036963368.1 mRNA upstream 132623 68125603 ~ 68147765 (-) False nr1i2
NM_001124672.1 mRNA upstream 135360 68128340 ~ 68144764 (-) True nr1i2
XM_036975020.1 mRNA upstream 213350 68206330 ~ 68208663 (-) False si:ch211-214p13.7
XM_036975019.1 mRNA upstream 213350 68206330 ~ 68208674 (-) False si:ch211-214p13.7
TU328453 other downstream 106304 67883752 ~ 67886232 (-) True G289653
TU328494 other downstream 359043 67626832 ~ 67633493 (-) True G289678
TU327202 other downstream 1149655 66842671 ~ 66842881 (-) True G288578
TU325523 other downstream 2412041 65579791 ~ 65580495 (-) True G287112
TU325443 other downstream 2545253 65446825 ~ 65447283 (-) True G287042
TU328904 other upstream 213610 68206590 ~ 68208395 (-) True si:ch211-214p13.7
TU329440 other upstream 586123 68579103 ~ 68580707 (-) True G290542
TU329467 other upstream 633352 68626332 ~ 68647620 (-) True G290567
TU329515 other upstream 717387 68710367 ~ 68717385 (-) True G290598
TU329520 other upstream 728828 68721808 ~ 68724914 (-) True G290602

Expression Profile