RNA id: TU328723


Basic Information

Item Value
RNA id TU328723
length 1546
RNA type TUCP
GC content 0.37
exon number 2
gene id G289883
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 68223725 ~ 68225306 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGACGGTAATACTTTGCGTAACTGTGATGTTATGTTGGTGTGGTGTGATTGTTATCAAGCAGAACATACAGTGACACATTTTAGTCTCAGTTATTGTTGGGTTGGAAACATGTTACAGTAGTTTGAAACAATTTAAAATTAAGGTTACATGATCACTATGCAGCTCAACTcaattacaatacattcaccAGAGACTAGTGATGTCCCTCATTGTGTTGTAAATTGTGACAGAGTCATAGAGTATTACCATATGAAGAAGGAATGGCTGGTTTTTGAGAGTGCAGAATGAAGCTTTGGTCTTGTCTCACTGGTAATGCCTTTGGTCCCTACACTGCTTCTGTATGTGTTCTGGTAAAatcctgagtgagtgagtggttaCTGTAAAGTACTGGGGTTTTCTTTGTGCACCAGATACAGACCCTGTCCTGCACAAGGCTGTGTGCTTGTGGTTTAAAAACACAGTGCACAGGAAGTGCTAGGAGCAGCCCACCACACCAAGACAGCGAGAAACTCTATGCTCTTAGAGATGACATTTATTCAGAGAAAACTCTATGCTCAAATAGATTGTTTATTCAGAGGGAAACTCTATGCTCAGAGAGATTATGTTTATTCAGAGAGATACTCTATGCTCAGAGAGATTATGTTTATTCAGAGAGATACTCTATGCTCAGAGAGATTATGTTTATTCAGAGAGAAATTATGCTCAGAGAGATAATGTTTATTCAGAGGGAAATTATGCTCAGAGAGATAATGTTTATTCAGAGAGAAATTATGCTCAGAGAGATAATGTTTATTCAGAGATAAACTCTATGCTCAGAGAGATGACATTTATTCAGAGAAAACTCTATGCTCAAATAGATTGTTTATTCAGACAGAAACTCTATGCTCAAATAGATTGTTTATTCAGAGGGAAACTCTATGCTCAGAGAGATTATGTTTATTCAGAGATAAACTCTATGCTCAGAGAGATTCTGTTTATTCAGAGAGAAACTCTATGCTCAGAGAGATTgtgtttattcagagagaaaTTATGCTCAGAGAGATAATGTTTATTCAGAGGGAAATTATGCTCAGAGAGATAATGTTTATTCAGAGAGAAACTATGCTCAGAGAGATTATGTTTATTCAGAGAGAAACTCTATGCTCAGAGAGATTgtgtttattcagagagaaaCTATGCTCAGAGAGATTATGTTTATTCAGAGAGAAACTCTATGCTCAGAGATGATGCACTATTGAAATTATCCTGGCAGTGTCGAACCAATGCAAGTTGTCTTGTTTTCTGATTTGACTTATAAAACTTATTGAGACACAAAATATACAAACTCTTCAGCCTAATTATGCCATTACATTATTGTCATAATTGCTGACACATCCATTAGCCTAACAATCTCAGAAGAGGTCCCATTCTTATCAGTGTAATGGATTTGTATTAGTCTATAAGATAGTCATTTTCAGCCATAAATAAGTAACCTAGGTGTTTTTTGAGAGCAAACCACTGACTGTACCTTGATGCTGTGTTACTTTCAGCTACTGCCCGCCCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU328774 lncRNA upstream 22816 68200681 ~ 68200909 (+) True G289933
TU328712 lncRNA upstream 40529 68180062 ~ 68183196 (+) False G289881
TU328716 lncRNA upstream 40529 68180062 ~ 68183196 (+) True G289881
TU328660 lncRNA upstream 166445 68057057 ~ 68057280 (+) True G289840
TU328648 lncRNA upstream 181826 68041129 ~ 68041899 (+) True G289828
TU328939 lncRNA downstream 31155 68256461 ~ 68256755 (+) True G290078
TU328943 lncRNA downstream 33124 68258430 ~ 68258666 (+) True G290082
TU328956 lncRNA downstream 65365 68290671 ~ 68293010 (+) True G290094
TU328998 lncRNA downstream 130933 68356239 ~ 68361416 (+) True G290126
TU328972 lncRNA downstream 146637 68371943 ~ 68372280 (+) True G290110
XR_002472987.2 mRNA upstream 2309 68216285 ~ 68221416 (+) False LOC110520465
XM_021597801.2 mRNA upstream 2311 68216289 ~ 68221414 (+) True LOC110520465
XM_021597799.2 mRNA upstream 45952 68173648 ~ 68177773 (+) False si:ch211-214p13.9
XM_021597800.2 mRNA upstream 45952 68173648 ~ 68177773 (+) True si:ch211-214p13.9
XM_036975017.1 mRNA upstream 109048 68058115 ~ 68114677 (+) False LOC110504531
XM_036975021.1 mRNA downstream 36108 68261414 ~ 68278415 (+) True si:ch73-390b10.2
XM_036975022.1 mRNA downstream 99120 68324426 ~ 68365482 (+) True LOC110504539
XR_005051363.1 mRNA downstream 108938 68334244 ~ 68337315 (+) True LOC118964318
XM_021597815.2 mRNA downstream 621202 68846508 ~ 68850315 (+) True LOC110520472
XM_036965140.1 mRNA downstream 629466 68854772 ~ 68858737 (+) False LOC110504548
TU328273 other upstream 461302 67761737 ~ 67762423 (+) True G289517
TU328233 other upstream 541603 67678862 ~ 67682122 (+) False G289486
TU328193 other upstream 591515 67625353 ~ 67632210 (+) False G289455
TU328195 other upstream 591515 67625353 ~ 67632210 (+) True G289455
TU327812 other upstream 703755 67519326 ~ 67519970 (+) True LOC110505416
TU330151 other downstream 1401037 69626343 ~ 69630369 (+) True LOC110520478
TU330321 other downstream 1470089 69695395 ~ 69695836 (+) True G291327
TU330385 other downstream 1636754 69862060 ~ 69870212 (+) True LOC110520485
TU330486 other downstream 1693876 69919182 ~ 69922119 (+) True LOC110504602
TU330474 other downstream 1724361 69949667 ~ 69952168 (+) True G291461

Expression Profile