RNA id: TU329068


Basic Information

Item Value
RNA id TU329068
length 1337
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G290190
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 68365540 ~ 68366876 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGCATAAGCCCGTGATTTGGGCTATACCTAGATAATGCGTGAGCCACTCAGTCGGTTGAGTCCGTCCCCTGCTCAGCTAAGTACCATCACACACCCTGTTAGCAGCGACACAACAAACACATATAGCAACACTGCAGTGGATACACAGACCAGATGGCGCTTTAGTTGACCATAGAGCACATACTGTTTCAAAAAAGCAAAGATGCACCTCTAAAAGAGAACCAGGCAGAGAAACCCTTTCCACGGGGTGGAAAGTCTACTGTGATAACAATTGTCTGGATCCAGATTAACAGCCCAAATATGAAGTAACGGTACATCTCCAAAGCCCCTGTTCCTTAGTTGTGTTCTCTGCTGTCTTCACTAAGGTTGGTTTGGTCGCAGTTAAGTCTGGCCTCCAATCCACACCCAACCCAGTCTGGTTAAGAGCACAATGTAACACACTATTTACAATGACACAGTCCACAGCGCAGAAAACAGATAATGCTTGAAGATAATGCTTGAAGAAAGCGCAACATTTTATAGGCAGGCACAACAGAGTTCCTACCTTCAGGACATTGACGACACTAATAACAAGCACATATTCAGCATTTTAACATCCAAAGTAAAGTGACAATGAGTAGAAGCTTTGTAAAGGTATTACTGATACTGCATGTCAAGCTACTGCCCTGCGAAACCCCTAAAGCTTTTCATTCAGGTGTACACCCCCCTGTTAACCACAGGAGTTGCTGAGAGGACGGCTCATAGAAacgtctggaatggagtaaatggaatggaaaCCACGTGCTTGATGTGTTCGATACCATTTCATTCATTCCATTACAGCCATttctatgagcccgtcctccccgattaaggtgccaccagccgccTGTGCTACCAACACACATCCCTTATATCCCACCCACATAATAATTCCCCGTCCTATATGAGGGATTCATCAGTAAACATGATTGAAATAACTACATTGGCATACATATACTATTGAACAAAACATTGTTTTCCCATCACTTGGGACAAATGCTAACGCAAAATTGTGCTACGATAATATTTCCTTATTTTCTTTTGTTTGGCAACTATTAAACGGTGTATCATTTTCCTGTGGGTATGTTAGGAAAGCATTCTCCATGGGTCATGAGTATTTTCCCTTTTTGAGTGGATACCACAGGTTTGATTTACCCATGCTTAGTTCATCCCTTCAGATAGACATATCTAACTATCTCTCTGACCCCATTGGCTGCCTTGACATTAGCGTTGCAGTAATGGTCAGGCGTTGGTTTCCTTATAGCCCGTGGGTGCATCTCCCCATACCTACCGTCCGCAGGTTAACAGTTTCCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU329038 lncRNA downstream 46712 68318273 ~ 68318828 (-) True G290163
TU329030 lncRNA downstream 57830 68307401 ~ 68307710 (-) True G290155
TU329029 lncRNA downstream 58230 68307050 ~ 68307310 (-) True G290154
TU329017 lncRNA downstream 79781 68285153 ~ 68285759 (-) False G290144
TU329018 lncRNA downstream 79781 68285153 ~ 68285759 (-) True G290144
TU329067 lncRNA upstream 1268 68368144 ~ 68370857 (-) True G290189
TU329069 lncRNA upstream 5081 68371957 ~ 68372339 (-) True G290191
TU329087 lncRNA upstream 20674 68387550 ~ 68387778 (-) True G290209
TU329092 lncRNA upstream 23492 68390368 ~ 68390634 (-) True G290214
TU329099 lncRNA upstream 28232 68395108 ~ 68395368 (-) True G290221
XM_021597811.2 mRNA downstream 72790 68278572 ~ 68292750 (-) True LOC110520467
XM_021597810.2 mRNA downstream 72791 68278572 ~ 68292749 (-) False LOC110520467
XM_021597805.2 mRNA downstream 112299 68227272 ~ 68253241 (-) False LOC110520466
XM_021597813.2 mRNA upstream 88585 68455461 ~ 68460579 (-) False LOC110520470
XR_002472988.2 mRNA upstream 217596 68584472 ~ 68586742 (-) True LOC110520471
XM_021597817.2 mRNA upstream 893627 69260503 ~ 69277276 (-) False LOC110520474
XM_036975027.1 mRNA upstream 1013591 69380467 ~ 69469698 (-) True LOC110520476
XM_021597820.2 mRNA upstream 1228961 69595837 ~ 69614655 (-) True LOC110520477
TU328904 other downstream 157145 68206590 ~ 68208395 (-) True si:ch211-214p13.7
TU328453 other downstream 479308 67883752 ~ 67886232 (-) True G289653
TU328494 other downstream 732047 67626832 ~ 67633493 (-) True G289678
TU327202 other downstream 1522659 66842671 ~ 66842881 (-) True G288578
TU325523 other downstream 2785045 65579791 ~ 65580495 (-) True G287112
TU329440 other upstream 212227 68579103 ~ 68580707 (-) True G290542
TU329467 other upstream 259456 68626332 ~ 68647620 (-) True G290567
TU329515 other upstream 343491 68710367 ~ 68717385 (-) True G290598
TU329520 other upstream 354932 68721808 ~ 68724914 (-) True G290602
TU329646 other upstream 479735 68846611 ~ 68850854 (-) True G290713

Expression Profile