RNA id: TU329067


Basic Information

Item Value
RNA id TU329067
length 2468
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G290189
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 68368144 ~ 68370857 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cccACAAACATTCTAGGGTAGAGTTCCCTTATGCTTCCATCGCCCCCTCGCAACTCAACTCCCATCGAACGGaatgagtcagacacacacaaacacacacacacaccacacacacacacacagacacatcaagacacacacacatgcttaagGCAATGGTGGCCTTGCGACTGGGACCATTCAAGTAGATCTAAATatgccctcctcctcttctctgccCCCAACACGTCATCCTCTTCCCCCTGCCTGCAGCACAAAGAGTCCACACAGACTCTTAGAAATACCCACAATGCTACACTCTACCCTACGTCACACAGACTTTAGACAGACAGTTCCCAAATGGAATATCCccaaagtttgaatgaatgcaaATCTACAAACCAAATTTAAAACTGTCTCTTAAACAGTATCTTGACTAACCTTATAATCTAACTATTGCACACACACGGACATCTAGAGTGCCAGATAGGAAGATATGAAGTATGGCGATAGAAAGCCATTCACAAAAagacgcatgcacatacacatacattcacacacacgcgcacacacacacacacagtcttgtcacacacacacacacactctgcaggaGTCTTGTTGGTCTGCATGCTGGAGTGAAGGGAAGGCAGTGCACTGTTGATACCCAGCCGGAGGGCATATCTGCCAGTGTGTTCTGACTGGTATTTACCGTGAGGAGAGCCCTCTAATCCCTAATCTGCCCATGGGAAACATGAACAGTAATTCAATAATATCCAAGAACAGCCAGCTTAACCCTGACACATAGCCTGCAATTCATCTGCATGATATTGACTGGAATGACTATTTCACTCCGTGTGTTTCTCTGTCAAACTGTATGACAACAAAATGACTAAAACTAGAAATATTATCCTCTGGCCTTCTACCATTGAAAATGAACATACACCATAGTTTTAATCCAAAAGTGTTCAGCTAATAGATCTCCAAAGCATTGAATTCTGGACTAGACAATACTAGTTCTGTGCCAGCCTATGTTGATTGGGAGGGACAACGAATCACCCTGTACAAAGTAAATTAATCATGCCGCGACAGCAGCAATCAGTCTAGCCGCTCATTATAAAAAGGTAAAAACTGAGATTAGGATTATACATGGGCAAAGTGTTTTAATCTGACACAGGGGCATCTCCTCTGTTAAAACAACCATGATGATCAATGACATGTTCCAGTGGAGAAGTGACAGGAGTGGCATCTCTAGCTCTCATTGATACTGACATAGAGGCTTGCTGACATCACATTATACAGCATTCCTGAGACAGATGCCACCAGTAATGGCATTAATATGTCCTgtcaatttgtgtgtgtgtgtatgtgagagagagacagagagagagagagagagagagagagagagagagagagacagagagagagagagagacagagagagacagagagagagagagagaccgcgcTCATTTACCTCTGTTTCAGGGTGTTCAACAGAATGATACCACCACTGGGATAGAGAGTAAGTctgtgttatttatctttgtacTAATCAATCCAAAGTGGAAATAGCTAGAGAGGTCATTTGAGCAGTACAGTGTGTTATGATTTGGTTGACATTTAGGAGTCCCCTTCCATTGGCTGAATCTGATGAATGGGAATGCTGCTCATTTTGGATGTGACAGACAGATCGGGATGATTCAGTTCCTCTCTCTCGCCCACACCATGCTGCCCTGGCTCTGCTCTGACATCTGGGTGACATCTGCTTAAAGTACATCCTCTCTCCAGCCTGTATGTCAGCCTGAAAACCCTCCCAGCTCACTGCTCTGCTCTCTCAGTCTGTCCCTGGATACACTCCAGGCTGAACTCTTCCCTCTGACTCTGACGTCTCTGCCACAGTTAGCAGAcgaagggggacagagagaaatgTTTGAGACAGAGAAGGTCAGTGGACAGATCTGAGTGCCTCAGGTGCTCTGAGAATGAGTAGTAATCAGTGAACAGTGTACGTCTGAGTAAAGCCTGGTGAaggttttgagtgtgactcctctccccctctctgccgcTCTCCCTGGAGGGGACGTTTTTGAACGCAACACCCTCTCTGTCTTTTTGCTGGAGGATAAGGAGGAACGGGAGAAGCAGATGCTCGTTAATCAGCAGAGAGAATGTTTagagtggaaaggagaggagaggagggggaaagagaagagaaggaaaggtGAATAGAAGACTGAGTAATTGTTTTGCAAGCCAAATAAACCCTGTCCTAAACACTCAGGCAGAGAAACCTTGTCCTATACTCTACAGTCATCCTCAAAGATGGTTGAAGGTCCCATGCCATCGAATCACCATCTCCTGACCCAGTCTCCTATATTAAGGCAAAGGTCTGTGTCGTGACTTCCCCCGAAggtggttcctctccttgttcgggcggtgctcggcggtcggcgTCGTTCAACAGCATGCGGCAGAACTGCAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU329068 lncRNA downstream 1268 68365540 ~ 68366876 (-) True G290190
TU329038 lncRNA downstream 49316 68318273 ~ 68318828 (-) True G290163
TU329030 lncRNA downstream 60434 68307401 ~ 68307710 (-) True G290155
TU329029 lncRNA downstream 60834 68307050 ~ 68307310 (-) True G290154
TU329017 lncRNA downstream 82385 68285153 ~ 68285759 (-) False G290144
TU329069 lncRNA upstream 1100 68371957 ~ 68372339 (-) True G290191
TU329087 lncRNA upstream 16693 68387550 ~ 68387778 (-) True G290209
TU329092 lncRNA upstream 19511 68390368 ~ 68390634 (-) True G290214
TU329099 lncRNA upstream 24251 68395108 ~ 68395368 (-) True G290221
TU329103 lncRNA upstream 25186 68396043 ~ 68396242 (-) True G290225
XM_021597811.2 mRNA downstream 75394 68278572 ~ 68292750 (-) True LOC110520467
XM_021597810.2 mRNA downstream 75395 68278572 ~ 68292749 (-) False LOC110520467
XM_021597805.2 mRNA downstream 114903 68227272 ~ 68253241 (-) False LOC110520466
XM_021597813.2 mRNA upstream 84604 68455461 ~ 68460579 (-) False LOC110520470
XR_002472988.2 mRNA upstream 213615 68584472 ~ 68586742 (-) True LOC110520471
XM_021597817.2 mRNA upstream 889646 69260503 ~ 69277276 (-) False LOC110520474
XM_036975027.1 mRNA upstream 1009610 69380467 ~ 69469698 (-) True LOC110520476
XM_021597820.2 mRNA upstream 1224980 69595837 ~ 69614655 (-) True LOC110520477
TU328904 other downstream 159749 68206590 ~ 68208395 (-) True si:ch211-214p13.7
TU328453 other downstream 481912 67883752 ~ 67886232 (-) True G289653
TU328494 other downstream 734651 67626832 ~ 67633493 (-) True G289678
TU327202 other downstream 1525263 66842671 ~ 66842881 (-) True G288578
TU325523 other downstream 2787649 65579791 ~ 65580495 (-) True G287112
TU329440 other upstream 208246 68579103 ~ 68580707 (-) True G290542
TU329467 other upstream 255475 68626332 ~ 68647620 (-) True G290567
TU329515 other upstream 339510 68710367 ~ 68717385 (-) True G290598
TU329520 other upstream 350951 68721808 ~ 68724914 (-) True G290602
TU329646 other upstream 475754 68846611 ~ 68850854 (-) True G290713

Expression Profile