RNA id: TU329403



Basic Information


Item Value
RNA id TU329403
length 356
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G290508
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 68510384 ~ 68510739 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gaagaaactttcaaagttcttgacattttccagattgactgaccttcatgtcttaaagtaataatggactgtaatttctctttgcttatttgagcaggtcttgccataatatggacatggtattttaccaaatagggctgtcttctgtataccacccctaccttgttacaacacaactgattggctcaaacacattaaagaaggaaaggaattccacaaattaacttttaacaaggcacacctgttaatttaaatgcattctaggtgactacctcatgaagctggttgatagaatgccaagagtgtgcaaagctgtcatcaagcttggctaatttgaagaatctaaaatatagcat

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU329395 lncRNA downstream 6611 68503570 ~ 68503773 (-) True G290501
TU329390 lncRNA downstream 12514 68497632 ~ 68497870 (-) True G290496
TU329389 lncRNA downstream 12900 68497235 ~ 68497484 (-) True G290495
TU329371 lncRNA downstream 39600 68470558 ~ 68470784 (-) True G290477
TU329357 lncRNA downstream 53220 68456525 ~ 68457164 (-) True LOC110520470
TU329413 lncRNA upstream 16160 68526899 ~ 68527164 (-) True G290518
TU329414 lncRNA upstream 16542 68527281 ~ 68527509 (-) True G290519
TU329415 lncRNA upstream 17194 68527933 ~ 68528188 (-) True G290520
TU329421 lncRNA upstream 28677 68539416 ~ 68539797 (-) True G290526
TU329429 lncRNA upstream 44478 68555217 ~ 68556102 (-) True G290534
XM_021597813.2 mRNA downstream 49805 68455461 ~ 68460579 (-) False LOC110520470
XM_021597811.2 mRNA downstream 217634 68278572 ~ 68292750 (-) True LOC110520467
XM_021597810.2 mRNA downstream 217635 68278572 ~ 68292749 (-) False LOC110520467
XM_021597806.2 mRNA downstream 257143 68227272 ~ 68253241 (-) False LOC110520466
XR_002472988.2 mRNA upstream 73733 68584472 ~ 68586742 (-) True LOC110520471
XM_021597817.2 mRNA upstream 749764 69260503 ~ 69277276 (-) False LOC110520474
XM_036975027.1 mRNA upstream 869728 69380467 ~ 69469698 (-) True LOC110520476
XM_021597820.2 mRNA upstream 1085098 69595837 ~ 69614655 (-) True LOC110520477
XM_021597827.2 mRNA upstream 1130527 69641266 ~ 69644739 (-) False LOC110520480
TU328904 other downstream 301989 68206590 ~ 68208395 (-) True si:ch211-214p13.7
TU328453 other downstream 624152 67883752 ~ 67886232 (-) True G289653
TU328494 other downstream 876891 67626832 ~ 67633493 (-) True G289678
TU327202 other downstream 1667503 66842671 ~ 66842881 (-) True G288578
TU325523 other downstream 2929889 65579791 ~ 65580495 (-) True G287112
TU329440 other upstream 68364 68579103 ~ 68580707 (-) True G290542
TU329467 other upstream 115593 68626332 ~ 68647620 (-) True G290567
TU329515 other upstream 199628 68710367 ~ 68717385 (-) True G290598
TU329520 other upstream 211069 68721808 ~ 68724914 (-) True G290602
TU329646 other upstream 335872 68846611 ~ 68850854 (-) True G290713

Expression Profile