RNA id: TU329595



Basic Information


Item Value
RNA id TU329595
length 1038
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G290676
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 68816037 ~ 68817074 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gtataaacaagtctatatacaatgtgagcaaatgaggtgagaagggaggtgaaggcaaaaaaggccatggtggcaaggtaaatacaatatagcaagtaaaacactggaatggtagttttgcaatggaagaatgtgcaaagtagaaataaaaataatggggtgcaaaggagcaaaataaataaataaattaaacaagAGCTGTACTGTTtttagtgcagcctttgatattgtTGACCCTAATCTGTTGTTGAGGAAACTCATGTGTAATGGCTTTTCAATCTCTGCCATTGTGAATTCAGAGCTATTTATTTAAaagaactcagagggttttctttaatgggaGCGTCTCTAACGTTggacatgtaaagtgtggtgtaccgcagggcagctctctaggccctctactctcttctctttTTACCATTGACCTGTTACTGGAATTAAACAAagtatgtgtgtccatgtatgctgatgattctaccatatacacatcagcaaccatAACTGTGGATGTCACTGAACCCTTatcaaagagttgcagtctgttttggaatggttggcctgtaataaactggtcctgaacatctctcaAACTACGAGCATTGCATTTGGTACAAATTATTCCTTAACTCagttgaatctggtaatgaatggtgtggctgttgaacaagttgagactAAATTAcctggtgttaccttagattgtaaactgtcatggtcaaaacgtaTAGATTCAATAGTTGGGGAGAGGTctggccgtaataaagagattctctgcttttttgacaccacactccacaaatcAAGTCCTGTAGGcgctagttttatcttatcttgattattgtccagtcaaatggtcaagtgctgcaaagaaagacgtagttaagctgcagctggcccagaacagagtggtaCATCTTCCTATTCATTGCAATCAGATGGCTAATGGTAATACTATGTAGGCCAGTCTCTCTTTGctgagagttgaggaaagactgacccGCATCCCTTCTGGTTTTATAcattaatgtgttggaa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU329593 lncRNA downstream 399 68815330 ~ 68815638 (-) True G290674
TU329592 lncRNA downstream 801 68815012 ~ 68815236 (-) True G290673
TU329591 lncRNA downstream 1148 68814486 ~ 68814889 (-) True G290672
TU329541 lncRNA downstream 60185 68755410 ~ 68755852 (-) True G290623
TU329516 lncRNA downstream 88491 68722899 ~ 68727546 (-) True G290599
TU329602 lncRNA upstream 3521 68820595 ~ 68820870 (-) True G290683
TU329605 lncRNA upstream 5978 68823052 ~ 68823271 (-) True G290686
TU329625 lncRNA upstream 27712 68844786 ~ 68845063 (-) True G290706
TU329654 lncRNA upstream 34804 68851878 ~ 68853389 (-) True G290714
TU329657 lncRNA upstream 36371 68853445 ~ 68853914 (-) False G290715
XR_002472988.2 mRNA downstream 229295 68584472 ~ 68586742 (-) True LOC110520471
XM_021597813.2 mRNA downstream 355458 68455461 ~ 68460579 (-) False LOC110520470
XM_021597811.2 mRNA downstream 523287 68278572 ~ 68292750 (-) True LOC110520467
XM_021597810.2 mRNA downstream 523288 68278572 ~ 68292749 (-) False LOC110520467
XM_021597808.2 mRNA downstream 562796 68227272 ~ 68253241 (-) True LOC110520466
XM_021597817.2 mRNA upstream 443429 69260503 ~ 69277276 (-) False LOC110520474
XM_036975027.1 mRNA upstream 563393 69380467 ~ 69469698 (-) True LOC110520476
XM_021597820.2 mRNA upstream 778763 69595837 ~ 69614655 (-) True LOC110520477
XM_021597827.2 mRNA upstream 824192 69641266 ~ 69644739 (-) False LOC110520480
XM_021597828.2 mRNA upstream 832463 69649537 ~ 69675010 (-) False ankrd10b
TU329520 other downstream 91123 68721808 ~ 68724914 (-) True G290602
TU329515 other downstream 98652 68710367 ~ 68717385 (-) True G290598
TU329467 other downstream 168417 68626332 ~ 68647620 (-) True G290567
TU329440 other downstream 235330 68579103 ~ 68580707 (-) True G290542
TU328904 other downstream 607642 68206590 ~ 68208395 (-) True si:ch211-214p13.7
TU329646 other upstream 29537 68846611 ~ 68850854 (-) True G290713
TU330123 other upstream 438931 69256005 ~ 69256544 (-) True G291138
TU330998 other upstream 1163272 69980346 ~ 69996605 (-) True G291901
TU331092 other upstream 1290466 70107540 ~ 70107950 (-) True G291977
TU332000 other upstream 1902962 70720036 ~ 70720591 (-) True G292753

Expression Profile