RNA id: TU330613



Basic Information


Item Value
RNA id TU330613
length 529
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G291572
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 69345002 ~ 69351042 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TGGATATGTTCACGATGAATGATTTCGACAGGCTCAGAAAAAGTTGTTCATTCTATGTATGGTACTACAGAGATCGAAATTCAAAAGTGAAACATTGTTTCTGAGGTCGGAGaggcagacagcaaggtttaaattaacccctgctgtaccaaactaaatgctatgcatatattaacccccgctgtaccaaactaaatgctatgcatatattaacccctgctgtaccaaactaaatgctaggattatattaacccctgctgtaccaaactaaatgctaggcttatattaacccctgctgtaccaaactaaatgctaggcttatattaacccctgctgtaccaaactaaatgctaggcatatattaacccctgctgtaccaaactaaatgctaggcttatattaacccctgctgtaccaaactaaatgctaggtttatattaacccctgctgtaccaaactaaatgctaggattatattaacccctgctgcaCCAACCTAAACGCTAggattatattaacccctgctgtac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU330599 lncRNA downstream 19882 69324347 ~ 69325120 (-) True G291560
TU330588 lncRNA downstream 38366 69306427 ~ 69306636 (-) True G291549
TU330585 lncRNA downstream 44911 69299878 ~ 69300091 (-) True G291546
TU330133 lncRNA downstream 58942 69285737 ~ 69286060 (-) True G291148
TU330111 lncRNA downstream 75818 69260523 ~ 69269184 (-) True LOC110520474
TU330581 lncRNA upstream 23535 69374577 ~ 69377758 (-) True G291542
TU330579 lncRNA upstream 26901 69377943 ~ 69379231 (-) True G291540
TU330645 lncRNA upstream 88121 69439163 ~ 69439575 (-) True G291604
TU330663 lncRNA upstream 129467 69480509 ~ 69480944 (-) True G291622
TU330675 lncRNA upstream 148538 69499580 ~ 69507947 (-) False G291631
XM_021597817.2 mRNA downstream 67726 69260503 ~ 69277276 (-) False LOC110520474
XR_002472988.2 mRNA downstream 758260 68584472 ~ 68586742 (-) True LOC110520471
XM_021597813.2 mRNA downstream 884423 68455461 ~ 68460579 (-) False LOC110520470
XM_021597811.2 mRNA downstream 1052252 68278572 ~ 68292750 (-) True LOC110520467
XM_021597810.2 mRNA downstream 1052253 68278572 ~ 68292749 (-) False LOC110520467
XM_036975027.1 mRNA upstream 29425 69380467 ~ 69469698 (-) True LOC110520476
XM_021597820.2 mRNA upstream 244795 69595837 ~ 69614655 (-) True LOC110520477
XM_021597827.2 mRNA upstream 290224 69641266 ~ 69644739 (-) False LOC110520480
XM_021597828.2 mRNA upstream 298495 69649537 ~ 69675010 (-) False ankrd10b
XM_021597829.2 mRNA upstream 301491 69652533 ~ 69675008 (-) True ankrd10b
TU330123 other downstream 88458 69256005 ~ 69256544 (-) True G291138
TU329646 other downstream 494148 68846611 ~ 68850854 (-) True G290713
TU329520 other downstream 620088 68721808 ~ 68724914 (-) True G290602
TU329515 other downstream 627617 68710367 ~ 68717385 (-) True G290598
TU329467 other downstream 697382 68626332 ~ 68647620 (-) True G290567
TU330998 other upstream 629304 69980346 ~ 69996605 (-) True G291901
TU331092 other upstream 756498 70107540 ~ 70107950 (-) True G291977
TU332000 other upstream 1368994 70720036 ~ 70720591 (-) True G292753
TU332200 other upstream 1676577 71027619 ~ 71040152 (-) True G292919
TU333405 other upstream 2552272 71903314 ~ 71903908 (-) True G293984

Expression Profile