RNA id: TU330645



Basic Information


Item Value
RNA id TU330645
length 305
lncRNA type intronic
GC content 0.46
exon number 2
gene id G291604
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 69439163 ~ 69439575 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CTTTAAGGGAACTCGTACACTTCTGTAAGCCTCATTGAAGGCTAgaactatctgaaagccacagCCCTACTAAACTATCAACAACCAAGCATCAACaaccAAGAATCAACAACCCAGCATCAACAACCAAGCATCAACAACCCAGCCCAGCATCAACAACCCAGCATCAACAACCAAGTATCAACAACCCAGCCCAGCATCAACaacccagcatcaacaacccagcatcaacaacccagcatcaacaacccaGAATCAACAACCAAGCATCAACaacccagcatcaacaacccagcatcaacaac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU330579 lncRNA downstream 59932 69377943 ~ 69379231 (-) True G291540
TU330581 lncRNA downstream 61405 69374577 ~ 69377758 (-) True G291542
TU330613 lncRNA downstream 88121 69345002 ~ 69351042 (-) True G291572
TU330599 lncRNA downstream 114043 69324347 ~ 69325120 (-) True G291560
TU330588 lncRNA downstream 132527 69306427 ~ 69306636 (-) True G291549
TU330663 lncRNA upstream 40934 69480509 ~ 69480944 (-) True G291622
TU330675 lncRNA upstream 60005 69499580 ~ 69507947 (-) False G291631
TU330676 lncRNA upstream 61521 69501096 ~ 69507947 (-) True G291631
TU330697 lncRNA upstream 83180 69522755 ~ 69599709 (-) True G291652
TU330708 lncRNA upstream 151584 69591159 ~ 69594078 (-) True G291661
XM_021597817.2 mRNA downstream 161887 69260503 ~ 69277276 (-) False LOC110520474
XR_002472988.2 mRNA downstream 852421 68584472 ~ 68586742 (-) True LOC110520471
XM_021597813.2 mRNA downstream 978584 68455461 ~ 68460579 (-) False LOC110520470
XM_021597811.2 mRNA downstream 1146413 68278572 ~ 68292750 (-) True LOC110520467
XM_021597810.2 mRNA downstream 1146414 68278572 ~ 68292749 (-) False LOC110520467
XM_021597820.2 mRNA upstream 156262 69595837 ~ 69614655 (-) True LOC110520477
XM_021597827.2 mRNA upstream 201691 69641266 ~ 69644739 (-) False LOC110520480
XM_021597828.2 mRNA upstream 209962 69649537 ~ 69675010 (-) False ankrd10b
XM_021597829.2 mRNA upstream 212958 69652533 ~ 69675008 (-) True ankrd10b
XM_036975031.1 mRNA upstream 258890 69698465 ~ 69709126 (-) False otc
TU330123 other downstream 182619 69256005 ~ 69256544 (-) True G291138
TU329646 other downstream 588309 68846611 ~ 68850854 (-) True G290713
TU329520 other downstream 714249 68721808 ~ 68724914 (-) True G290602
TU329515 other downstream 721778 68710367 ~ 68717385 (-) True G290598
TU329467 other downstream 791543 68626332 ~ 68647620 (-) True G290567
TU330998 other upstream 540771 69980346 ~ 69996605 (-) True G291901
TU331092 other upstream 667965 70107540 ~ 70107950 (-) True G291977
TU332000 other upstream 1280461 70720036 ~ 70720591 (-) True G292753
TU332200 other upstream 1588044 71027619 ~ 71040152 (-) True G292919
TU333405 other upstream 2463739 71903314 ~ 71903908 (-) True G293984

Expression Profile