RNA id: TU330675



Basic Information


Item Value
RNA id TU330675
length 1060
lncRNA type intronic
GC content 0.33
exon number 4
gene id G291631
representative False

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 69499580 ~ 69507947 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


cagaacatatctacaatacaacacattatcacacactaccacaacatatctacaatacaacacattatcacacactaccacaacatatctacaatacaacacattattacacactaccacaacatatctacaatacaacacagtattacacactaccacaacatatctacaatacaacacagtattacacactactctaccacaacatatctacaatacaacacattatcacacactaccacaacatatctacaatacaacacattattacacactaccacaacatatctacaatacaacacattatcacacactaccacaacatatctacaatacaacacagtattacacactactctaccacaacatatctacaatacaacacattattacacactaccacaacatatctacaaaacaacacagtattacacactactctaccacaacatatctacaatacaacacattattacacactaccacaacatatctacaatacaacacagtattacacactactctaccacaacatatctacaatacaacacattattacacactaccacaacatatctacaatacaacacattatcacacactaccacaacatatctacaatacaacacattattacacactaccacaacacatctacaatacaacacagtattacacactactctaccacaacatatctacaatacaacacattattacacactaccacaacatatctacaatacaacacattattacacactaccacaacatatctacaatacaacacagtattacacactactctaccacaacatatctacaatacaacacattattacacactaccacaacatatctacaatacaacacagtattacacactactctaccacaacatatctacaatacaacacagtattacacactactctaccacaacacatctacaatacaacacattattacacactaccacaacatatctacaatacaacacagtattacacactactctaccacaacatatctacaatacaacacattattacacactacc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU330663 lncRNA downstream 18636 69480509 ~ 69480944 (-) True G291622
TU330645 lncRNA downstream 60005 69439163 ~ 69439575 (-) True G291604
TU330579 lncRNA downstream 120349 69377943 ~ 69379231 (-) True G291540
TU330581 lncRNA downstream 121822 69374577 ~ 69377758 (-) True G291542
TU330613 lncRNA downstream 148538 69345002 ~ 69351042 (-) True G291572
TU330697 lncRNA upstream 14808 69522755 ~ 69599709 (-) True G291652
TU330708 lncRNA upstream 83212 69591159 ~ 69594078 (-) True G291661
TU330709 lncRNA upstream 131886 69639833 ~ 69640694 (-) True G291662
TU330704 lncRNA upstream 133267 69641214 ~ 69644698 (-) True LOC110520480
TU330812 lncRNA upstream 206283 69714230 ~ 69714857 (-) False G291749
XM_036975027.1 mRNA downstream 29882 69380467 ~ 69469698 (-) True LOC110520476
XM_021597817.2 mRNA downstream 222304 69260503 ~ 69277276 (-) False LOC110520474
XR_002472988.2 mRNA downstream 912838 68584472 ~ 68586742 (-) True LOC110520471
XM_021597813.2 mRNA downstream 1039001 68455461 ~ 68460579 (-) False LOC110520470
XM_021597811.2 mRNA downstream 1206830 68278572 ~ 68292750 (-) True LOC110520467
XM_021597820.2 mRNA upstream 87890 69595837 ~ 69614655 (-) True LOC110520477
XM_021597827.2 mRNA upstream 133319 69641266 ~ 69644739 (-) False LOC110520480
XM_021597828.2 mRNA upstream 141590 69649537 ~ 69675010 (-) False ankrd10b
XM_021597829.2 mRNA upstream 144586 69652533 ~ 69675008 (-) True ankrd10b
XM_036975031.1 mRNA upstream 190518 69698465 ~ 69709126 (-) False otc
TU330123 other downstream 243036 69256005 ~ 69256544 (-) True G291138
TU329646 other downstream 648726 68846611 ~ 68850854 (-) True G290713
TU329520 other downstream 774666 68721808 ~ 68724914 (-) True G290602
TU329515 other downstream 782195 68710367 ~ 68717385 (-) True G290598
TU329467 other downstream 851960 68626332 ~ 68647620 (-) True G290567
TU330998 other upstream 472399 69980346 ~ 69996605 (-) True G291901
TU331092 other upstream 599593 70107540 ~ 70107950 (-) True G291977
TU332000 other upstream 1212089 70720036 ~ 70720591 (-) True G292753
TU332200 other upstream 1519672 71027619 ~ 71040152 (-) True G292919
TU333405 other upstream 2395367 71903314 ~ 71903908 (-) True G293984

Expression Profile