RNA id: TCONS_00029498


Basic Information

Item Value
RNA id TCONS_00029498
length 538
RNA type mRNA
GC content 0.50
exon number 7
gene id XLOC_014963
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 38473758 ~ 38611814 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTGAACCATGTCAAGTGATCTCTTCAGAATCTGGAAACACCTTGGGCTCGCAGAGCAAACAGGGGGCTAAAGGGGAACCGGGTGTTCCAGGCAAATCAGAACAGGGTCCACCTGGCCTTCCAGGAGTGGATGGCAGAACAGGAGAGAAGGGGGAGGCAGGGGTCGATGGAGCCAAAGGTGAAAAGGGTGAACCATGTTCCGGCTGTCCATCCAATGGACTAAATCCAGCAGGCATTTTGAAGCAGACTCAAAAGGGAGAGAAGGGAGATCCTGGTGTTGGGCAGAAAGGAGAGCAGGGAGAACCAGGACAGATTGGCTTTGGTGGACTTAAAGGAGAAAAGGGCAATGCTGCGTCAGCCAGTCTGATGCTTTTACACTTTGCACTTTATCCTCTCATTGTCACTCCCtcggtctgtatgtgtgtgtgtgagtgtgcgcaaGGATGGAGAGAATGAATCTCAATCTGTATTAGGAGGATAGCTGAAAAGTTTTACGCAGAGCCATTTACAATTGTCAAATTATGCAGCTTTCATGAACG

Function

GO:

id name namespace
GO:0030198 extracellular matrix organization biological_process
GO:0031012 extracellular matrix cellular_component
GO:0005615 extracellular space cellular_component
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-351 Predicted to be an extracellular matrix structural constituent. Predicted to be involved in extracellular matrix organization. Predicted to be active in extracellular matrix and extracellular space. Is expressed in dermis. Orthologous to human COL16A1 (collagen type XVI alpha 1 chain).

Ensembl:

ensembl_id ENSDART00000136775

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00030319 lncRNA downstream 100760 38323275 ~ 38372998 (-) True XLOC_014959
TCONS_00030318 lncRNA downstream 895043 37577852 ~ 37578715 (-) True XLOC_014955
TCONS_00030317 lncRNA downstream 901892 37569624 ~ 37571866 (-) True XLOC_014954
TCONS_00030316 lncRNA downstream 902830 37569624 ~ 37570928 (-) False XLOC_014954
TCONS_00030315 lncRNA downstream 904725 37567811 ~ 37569033 (-) True XLOC_014953
TCONS_00030320 lncRNA upstream 141229 38680899 ~ 38688614 (-) True XLOC_014964
TCONS_00029507 lncRNA upstream 887510 39427180 ~ 39579002 (-) False XLOC_014967
TCONS_00029506 lncRNA upstream 887510 39427180 ~ 39579002 (-) False XLOC_014967
TCONS_00030321 lncRNA upstream 892647 39432317 ~ 39578903 (-) False XLOC_014967
TCONS_00029508 lncRNA upstream 1021040 39560710 ~ 39579002 (-) True XLOC_014967
TCONS_00029495 mRNA downstream 54183 38387255 ~ 38419575 (-) True XLOC_014960
TCONS_00029491 mRNA downstream 965187 37501652 ~ 37508571 (-) True XLOC_014952
TCONS_00029489 mRNA downstream 1319322 37153409 ~ 37154436 (-) True XLOC_014950
TCONS_00029488 mRNA downstream 1833081 36503112 ~ 36640677 (-) True XLOC_014947
TCONS_00029486 mRNA downstream 2072476 36378302 ~ 36401282 (-) False XLOC_014947
TCONS_00029502 mRNA upstream 226943 38766613 ~ 38872650 (-) False XLOC_014965
TCONS_00029503 mRNA upstream 243555 38783225 ~ 38830582 (-) False XLOC_014965
TCONS_00029504 mRNA upstream 253568 38793238 ~ 38830720 (-) True XLOC_014965
TCONS_00029510 mRNA upstream 1627693 40167363 ~ 40175800 (-) True XLOC_014971
TCONS_00029511 mRNA upstream 1642971 40182641 ~ 40186328 (-) False XLOC_014972
TCONS_00029497 other downstream 9345 38464295 ~ 38464413 (-) True XLOC_014962
TCONS_00029496 other downstream 9509 38464127 ~ 38464249 (-) True XLOC_014961
TCONS_00029494 other downstream 411634 38062000 ~ 38062124 (-) True XLOC_014958
TCONS_00029493 other downstream 445140 38028498 ~ 38028618 (-) True XLOC_014957
TCONS_00029492 other downstream 836265 37637374 ~ 37637493 (-) True XLOC_014956
TCONS_00029505 other upstream 663948 39203618 ~ 39203735 (-) True XLOC_014966
TCONS_00029512 other upstream 1643064 40182734 ~ 40186263 (-) True XLOC_014972
TCONS_00029518 other upstream 2096902 40636572 ~ 40636691 (-) True XLOC_014976
TCONS_00029522 other upstream 2241498 40781168 ~ 40781271 (-) True XLOC_014978
TCONS_00029535 other upstream 2813152 41352822 ~ 41371978 (-) False XLOC_014985

Expression Profile

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