RNA id: TU330831



Basic Information


Item Value
RNA id TU330831
length 449
lncRNA type intronic
GC content 0.40
exon number 1
gene id G291764
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 69741216 ~ 69741664 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GAACCTctacgccggagtttactacatgggttggtcttccaacacataaacattacatattgccgtttacctcagctcattggctatctacccagctagatttcaagacgatcagtggtcattgggttaaaatacagtcaatcaacgaaacagcggtcatatcattggtgcacaatgatgtcattacttgttgtcttcaaatcggtttctttcagtcaatacgtcccgcgaaatgacccatcaggtttggttgtgttacaaacaaaccagttgattgcaatgaaaccaaacatgactggaaaagtcacgtttcgtgtgtgtatttacatcaaatgtgtcgtcgaaaatggaatgagacggaattcacggcacaagcggttcacaaaatgtttcctGTTAGGCTacaaaaattgattttatcaaacaaaagaccattcattgtgtaacaa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU330830 lncRNA downstream 2454 69738509 ~ 69738762 (-) True G291763
TU330827 lncRNA downstream 7684 69733320 ~ 69733532 (-) True G291760
TU330820 lncRNA downstream 12163 69728233 ~ 69729053 (-) True G291755
TU330813 lncRNA downstream 24802 69714230 ~ 69716414 (-) True G291749
TU330812 lncRNA downstream 26359 69714230 ~ 69714857 (-) False G291749
TU330833 lncRNA upstream 2180 69743844 ~ 69744143 (-) True G291766
TU330834 lncRNA upstream 2885 69744549 ~ 69744843 (-) True G291767
TU330840 lncRNA upstream 14782 69756446 ~ 69756694 (-) True G291773
TU330842 lncRNA upstream 15944 69757608 ~ 69757867 (-) True G291775
TU330790 lncRNA upstream 29166 69770830 ~ 69772552 (-) True G291728
XM_036975032.1 mRNA downstream 32047 69698559 ~ 69709169 (-) True otc
XM_036975031.1 mRNA downstream 32090 69698465 ~ 69709126 (-) False otc
XM_021597828.2 mRNA downstream 66206 69649537 ~ 69675010 (-) False ankrd10b
XM_021597829.2 mRNA downstream 66208 69652533 ~ 69675008 (-) True ankrd10b
XM_021597827.2 mRNA downstream 96477 69641266 ~ 69644739 (-) False LOC110520480
XM_036975037.1 mRNA upstream 33968 69775632 ~ 69814808 (-) False sytl5
XM_036975036.1 mRNA upstream 33968 69775632 ~ 69860999 (-) False sytl5
XM_036975034.1 mRNA upstream 33968 69775632 ~ 69861000 (-) False sytl5
XM_036975035.1 mRNA upstream 33968 69775632 ~ 69861001 (-) True sytl5
XM_021597838.2 mRNA upstream 134258 69875922 ~ 69903855 (-) False xk
TU330123 other downstream 484672 69256005 ~ 69256544 (-) True G291138
TU329646 other downstream 890362 68846611 ~ 68850854 (-) True G290713
TU329520 other downstream 1016302 68721808 ~ 68724914 (-) True G290602
TU329515 other downstream 1023831 68710367 ~ 68717385 (-) True G290598
TU329467 other downstream 1093596 68626332 ~ 68647620 (-) True G290567
TU330998 other upstream 238682 69980346 ~ 69996605 (-) True G291901
TU331092 other upstream 365876 70107540 ~ 70107950 (-) True G291977
TU332000 other upstream 978372 70720036 ~ 70720591 (-) True G292753
TU332200 other upstream 1285955 71027619 ~ 71040152 (-) True G292919
TU333405 other upstream 2161650 71903314 ~ 71903908 (-) True G293984

Expression Profile