RNA id: TU330850



Basic Information


Item Value
RNA id TU330850
length 312
lncRNA type intronic
GC content 0.60
exon number 1
gene id G291783
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 69785091 ~ 69785402 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gcccggtgcgctctattccagctcctcgcattggccgggctagaatgggcatccagccaggaaggagggtgccggctcagcgtCCCCGGGTCTCCAGTATACCTCTTTgaaccaggatatcctgcgccggctctgcgtactgtgtctccggtgggtctgcacagcccagtgcgtcctgcaTTTGCAGGGCGAAaataaacatccagccaggacgggttgtgtcagctctacactccagacctccagtaccaccagtgccgacaccacgcaccaggcttccagtgcgcctccagagTCCAGTACGTATTTTTC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU330790 lncRNA downstream 12539 69770830 ~ 69772552 (-) True G291728
TU330842 lncRNA downstream 27224 69757608 ~ 69757867 (-) True G291775
TU330840 lncRNA downstream 28397 69756446 ~ 69756694 (-) True G291773
TU330834 lncRNA downstream 40248 69744549 ~ 69744843 (-) True G291767
TU330833 lncRNA downstream 40948 69743844 ~ 69744143 (-) True G291766
TU330852 lncRNA upstream 953 69786355 ~ 69786677 (-) True G291785
TU330855 lncRNA upstream 4910 69790312 ~ 69790715 (-) True G291788
TU330856 lncRNA upstream 5357 69790759 ~ 69791033 (-) True G291789
TU330858 lncRNA upstream 9532 69794934 ~ 69795135 (-) True G291791
TU330859 lncRNA upstream 12532 69797934 ~ 69798165 (-) True G291792
XM_036975032.1 mRNA downstream 75922 69698559 ~ 69709169 (-) True otc
XM_036975031.1 mRNA downstream 75965 69698465 ~ 69709126 (-) False otc
XM_021597828.2 mRNA downstream 110081 69649537 ~ 69675010 (-) False ankrd10b
XM_021597829.2 mRNA downstream 110083 69652533 ~ 69675008 (-) True ankrd10b
XM_021597827.2 mRNA downstream 140352 69641266 ~ 69644739 (-) False LOC110520480
XM_021597838.2 mRNA upstream 90520 69875922 ~ 69903855 (-) False xk
XM_036975042.1 mRNA upstream 107549 69892951 ~ 69895131 (-) False LOC110520487
XM_036975043.1 mRNA upstream 107549 69892951 ~ 69895131 (-) False LOC110520487
XM_021583357.2 mRNA upstream 121903 69907305 ~ 69911161 (-) True LOC110504590
XM_021597848.2 mRNA upstream 142259 69927661 ~ 69933360 (-) True asb11
TU330123 other downstream 528547 69256005 ~ 69256544 (-) True G291138
TU329646 other downstream 934237 68846611 ~ 68850854 (-) True G290713
TU329520 other downstream 1060177 68721808 ~ 68724914 (-) True G290602
TU329515 other downstream 1067706 68710367 ~ 68717385 (-) True G290598
TU329467 other downstream 1137471 68626332 ~ 68647620 (-) True G290567
TU330998 other upstream 194944 69980346 ~ 69996605 (-) True G291901
TU331092 other upstream 322138 70107540 ~ 70107950 (-) True G291977
TU332000 other upstream 934634 70720036 ~ 70720591 (-) True G292753
TU332200 other upstream 1242217 71027619 ~ 71040152 (-) True G292919
TU333405 other upstream 2117912 71903314 ~ 71903908 (-) True G293984

Expression Profile