RNA id: TU330855



Basic Information


Item Value
RNA id TU330855
length 300
lncRNA type intronic
GC content 0.44
exon number 2
gene id G291788
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 69790312 ~ 69790715 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


tgttgctattattacctggggttccctatgtcccttgggggaggcatatgtaggctgggctattgattttatttttctcccctcttttactggggtctggacgagggcaactgtgttatttactcaatgcggggtggagaggatgaggcatttctttggtggggagaaggagacgttgtgcgttgctaactgttcccggtttttttttatgtacaccatttattttccttttatgtgaacgcagctgtaattactatccacttttacccagcgatgacttgcactaaagttcgattactg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU330852 lncRNA downstream 3635 69786355 ~ 69786677 (-) True G291785
TU330850 lncRNA downstream 4910 69785091 ~ 69785402 (-) True G291783
TU330790 lncRNA downstream 17760 69770830 ~ 69772552 (-) True G291728
TU330842 lncRNA downstream 32445 69757608 ~ 69757867 (-) True G291775
TU330840 lncRNA downstream 33618 69756446 ~ 69756694 (-) True G291773
TU330856 lncRNA upstream 44 69790759 ~ 69791033 (-) True G291789
TU330858 lncRNA upstream 4219 69794934 ~ 69795135 (-) True G291791
TU330859 lncRNA upstream 7219 69797934 ~ 69798165 (-) True G291792
TU330868 lncRNA upstream 21872 69812587 ~ 69812839 (-) True G291800
TU330877 lncRNA upstream 36584 69827299 ~ 69827660 (-) True G291808
XM_036975032.1 mRNA downstream 81143 69698559 ~ 69709169 (-) True otc
XM_036975031.1 mRNA downstream 81186 69698465 ~ 69709126 (-) False otc
XM_021597828.2 mRNA downstream 115302 69649537 ~ 69675010 (-) False ankrd10b
XM_021597829.2 mRNA downstream 115304 69652533 ~ 69675008 (-) True ankrd10b
XM_021597827.2 mRNA downstream 145573 69641266 ~ 69644739 (-) False LOC110520480
XM_021597838.2 mRNA upstream 85207 69875922 ~ 69903855 (-) False xk
XM_036975042.1 mRNA upstream 102236 69892951 ~ 69895131 (-) False LOC110520487
XM_036975043.1 mRNA upstream 102236 69892951 ~ 69895131 (-) False LOC110520487
XM_021583357.2 mRNA upstream 116590 69907305 ~ 69911161 (-) True LOC110504590
XM_021597848.2 mRNA upstream 136946 69927661 ~ 69933360 (-) True asb11
TU330123 other downstream 533768 69256005 ~ 69256544 (-) True G291138
TU329646 other downstream 939458 68846611 ~ 68850854 (-) True G290713
TU329520 other downstream 1065398 68721808 ~ 68724914 (-) True G290602
TU329515 other downstream 1072927 68710367 ~ 68717385 (-) True G290598
TU329467 other downstream 1142692 68626332 ~ 68647620 (-) True G290567
TU330998 other upstream 189631 69980346 ~ 69996605 (-) True G291901
TU331092 other upstream 316825 70107540 ~ 70107950 (-) True G291977
TU332000 other upstream 929321 70720036 ~ 70720591 (-) True G292753
TU332200 other upstream 1236904 71027619 ~ 71040152 (-) True G292919
TU333405 other upstream 2112599 71903314 ~ 71903908 (-) True G293984

Expression Profile