RNA id: TCONS_00029501


Basic Information

Item Value
RNA id TCONS_00029501
length 313
RNA type mRNA
GC content 0.59
exon number 5
gene id XLOC_014963
representative True

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 38473758 ~ 38611814 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGAGAGTGCAACTGTTTGCATAATATGTTTCCTGGAACTGGCGGACCTggagTCCCAGGTGGTGAAAACAGGGTACAGCCAGGTCCTCAGGGGCCTCCTGGACCACCGGGCCCTCCAGGTCCTCCAGGCCCCCAGGGCTTTACTGGAATCCCAGGCCCACAGAATCTCCTTCCTCAGGATTCAGCTTCTCCAGGAAAGGAAGGCTGTGGCGATTGTTCCAAGGGTCTACCAGGTGTGCCTGGCACGGTTGGTGCAAAGGGCGAGAAGGGAGATCAGGGCAAACCTGGCGTTGTGCCCTTGGAAGGATGCGAAC

Function

GO:

id name namespace
GO:0030198 extracellular matrix organization biological_process
GO:0031012 extracellular matrix cellular_component
GO:0005615 extracellular space cellular_component
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-351 Predicted to be an extracellular matrix structural constituent. Predicted to be involved in extracellular matrix organization. Predicted to be active in extracellular matrix and extracellular space. Is expressed in dermis. Orthologous to human COL16A1 (collagen type XVI alpha 1 chain).

Ensembl:

ensembl_id ENSDART00000152010

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00029500 lncRNA downstream 21014 38482489 ~ 38487275 (-) False XLOC_014963
TCONS_00030319 lncRNA downstream 135291 38323275 ~ 38372998 (-) True XLOC_014959
TCONS_00030318 lncRNA downstream 929574 37577852 ~ 37578715 (-) True XLOC_014955
TCONS_00030317 lncRNA downstream 936423 37569624 ~ 37571866 (-) True XLOC_014954
TCONS_00030316 lncRNA downstream 937361 37569624 ~ 37570928 (-) False XLOC_014954
TCONS_00030320 lncRNA upstream 163556 38680899 ~ 38688614 (-) True XLOC_014964
TCONS_00029507 lncRNA upstream 909837 39427180 ~ 39579002 (-) False XLOC_014967
TCONS_00029506 lncRNA upstream 909837 39427180 ~ 39579002 (-) False XLOC_014967
TCONS_00030321 lncRNA upstream 914974 39432317 ~ 39578903 (-) False XLOC_014967
TCONS_00029508 lncRNA upstream 1043367 39560710 ~ 39579002 (-) True XLOC_014967
TCONS_00029495 mRNA downstream 88714 38387255 ~ 38419575 (-) True XLOC_014960
TCONS_00029491 mRNA downstream 999718 37501652 ~ 37508571 (-) True XLOC_014952
TCONS_00029489 mRNA downstream 1353853 37153409 ~ 37154436 (-) True XLOC_014950
TCONS_00029488 mRNA downstream 1867612 36503112 ~ 36640677 (-) True XLOC_014947
TCONS_00029486 mRNA downstream 2107007 36378302 ~ 36401282 (-) False XLOC_014947
TCONS_00029502 mRNA upstream 249270 38766613 ~ 38872650 (-) False XLOC_014965
TCONS_00029503 mRNA upstream 265882 38783225 ~ 38830582 (-) False XLOC_014965
TCONS_00029504 mRNA upstream 275895 38793238 ~ 38830720 (-) True XLOC_014965
TCONS_00029510 mRNA upstream 1650020 40167363 ~ 40175800 (-) True XLOC_014971
TCONS_00029511 mRNA upstream 1665298 40182641 ~ 40186328 (-) False XLOC_014972
TCONS_00029497 other downstream 43876 38464295 ~ 38464413 (-) True XLOC_014962
TCONS_00029496 other downstream 44040 38464127 ~ 38464249 (-) True XLOC_014961
TCONS_00029494 other downstream 446165 38062000 ~ 38062124 (-) True XLOC_014958
TCONS_00029493 other downstream 479671 38028498 ~ 38028618 (-) True XLOC_014957
TCONS_00029492 other downstream 870796 37637374 ~ 37637493 (-) True XLOC_014956
TCONS_00029505 other upstream 686275 39203618 ~ 39203735 (-) True XLOC_014966
TCONS_00029512 other upstream 1665391 40182734 ~ 40186263 (-) True XLOC_014972
TCONS_00029518 other upstream 2119229 40636572 ~ 40636691 (-) True XLOC_014976
TCONS_00029522 other upstream 2263825 40781168 ~ 40781271 (-) True XLOC_014978
TCONS_00029535 other upstream 2835479 41352822 ~ 41371978 (-) False XLOC_014985

Expression Profile

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