RNA id: TU330413


Basic Information

Item Value
RNA id TU330413
length 493
lncRNA type antisense_over
GC content 0.48
exon number 1
gene id G291402
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 69813580 ~ 69814072 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAGAACTTCCTTTAGACAGTGGAGATGTGCCTGTGGTGGGTGTTACTTGCATGAGTGTGGTTTGGTGGTTTGTTCTCACCTATGTGAGTGAGGCGCAGAGCGGGTTGTGGAGCGTGGTGCAGACCGGGCACTGCGTacgctgtgtgtgtctgtgtcgggGACAGGAGCACACACACTCCTACCCTGCACCCCGTTCTCTGGCTTCAGGCTGGGACGGCTGCCCTTCTTATCCATCAATATCCTAGGATCCAACAGAACtagtcaatacacacacacatcagactgtggtgtgtgtgtgtgtgtgtgtgtgtgtgaatgcaatACGAAACCCATTCTCTGATGGAAGCCCAACTTTCCACTTGCCTGTGTAGTAGATTACTCTTTATATTAAATCTGTGCAGTGATCTTCTCCTGTGTCTTTTAATTATATTGTAAATGGTCAAACTGTGATTGACAACTGATTACATGTTGAAGTAATCCAGCCCAAACCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU330412 lncRNA upstream 343 69812733 ~ 69813237 (+) True G291401
TU330410 lncRNA upstream 2943 69810427 ~ 69810637 (+) True G291399
TU330408 lncRNA upstream 8951 69804416 ~ 69804629 (+) True G291397
TU330402 lncRNA upstream 16476 69796864 ~ 69797104 (+) True G291391
TU330401 lncRNA upstream 17155 69796119 ~ 69796425 (+) True G291390
TU330415 lncRNA downstream 68 69814140 ~ 69814368 (+) True G291404
TU330414 lncRNA downstream 3506 69817578 ~ 69817977 (+) True G291403
TU330422 lncRNA downstream 18678 69832750 ~ 69833055 (+) True G291411
TU330425 lncRNA downstream 23639 69837711 ~ 69837925 (+) True G291414
TU330389 lncRNA downstream 56784 69870856 ~ 69871336 (+) True G291378
XM_036975033.1 mRNA upstream 43934 69731759 ~ 69769646 (+) True LOC110504579
XM_036965146.1 mRNA upstream 81923 69712348 ~ 69731657 (+) True LOC110504569
LOC118964360 mRNA upstream 136917 69676510 ~ 69676663 (+) True LOC118964360
XM_021597825.2 mRNA upstream 172857 69634580 ~ 69640723 (+) False LOC110520479
XM_021597835.2 mRNA downstream 47822 69861894 ~ 69870212 (+) False LOC110520485
XM_036975041.1 mRNA downstream 47950 69862022 ~ 69867869 (+) False LOC110520485
XM_021597836.2 mRNA downstream 47950 69862022 ~ 69870212 (+) False LOC110520485
XM_036975039.1 mRNA downstream 47956 69862028 ~ 69867877 (+) False LOC110520485
XM_036975040.1 mRNA downstream 47957 69862029 ~ 69867876 (+) False LOC110520485
TU330321 other upstream 117744 69695395 ~ 69695836 (+) True G291327
TU330151 other upstream 183211 69626343 ~ 69630369 (+) True LOC110520478
TU328723 other upstream 1588274 68223725 ~ 68225306 (+) False G289883
TU328273 other upstream 2051157 67761737 ~ 67762423 (+) True G289517
TU328233 other upstream 2131458 67678862 ~ 67682122 (+) False G289486
TU330385 other downstream 47988 69862060 ~ 69870212 (+) True LOC110520485
TU330486 other downstream 105110 69919182 ~ 69922119 (+) True LOC110504602
TU330474 other downstream 135595 69949667 ~ 69952168 (+) True G291461
TU330553 other downstream 243468 70057540 ~ 70070357 (+) True LOC110520493
TU331609 other downstream 763046 70577118 ~ 70581089 (+) False LOC110520507

Expression Profile