RNA id: TU330877


Basic Information

Item Value
RNA id TU330877
length 362
lncRNA type intronic
GC content 0.42
exon number 1
gene id G291808
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 69827299 ~ 69827660 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cagttgcagagggcgGGGTTCTGACCCAGGGCACCAAGCTtactgatgagcttggagggcgctatggtattgaaggctgagctgtagtctgaacagcattcttacataggtacagtgccttgcgaaagtattcggcccccttgaactttgcgaacttttgccacatttcaggcttcaaacatgaagatataaaactgtatttttttgtgaagaatcaacaacaagtgggacacaatcatgaagtggaacgacatttattggatatttcaaacttttttaacaaatcaaaaactgaaaaattgggcgtgcaaaattattcagccccctcaagttaatactttgtactttgctgcgattacagc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU330868 lncRNA downstream 14460 69812587 ~ 69812839 (-) True G291800
TU330859 lncRNA downstream 29134 69797934 ~ 69798165 (-) True G291792
TU330858 lncRNA downstream 32164 69794934 ~ 69795135 (-) True G291791
TU330856 lncRNA downstream 36266 69790759 ~ 69791033 (-) True G291789
TU330855 lncRNA downstream 36584 69790312 ~ 69790715 (-) True G291788
TU330899 lncRNA upstream 26820 69854480 ~ 69854789 (-) True G291827
TU330901 lncRNA upstream 32449 69860109 ~ 69860311 (-) True G291829
TU330883 lncRNA upstream 34398 69862058 ~ 69863570 (-) True G291812
TU330914 lncRNA upstream 43998 69871658 ~ 69878304 (-) False xk
TU330911 lncRNA upstream 46954 69874614 ~ 69878304 (-) True xk
XM_036975037.1 mRNA downstream 12491 69775632 ~ 69814808 (-) False sytl5
XM_036975032.1 mRNA downstream 118130 69698559 ~ 69709169 (-) True otc
XM_036975031.1 mRNA downstream 118173 69698465 ~ 69709126 (-) False otc
XM_021597828.2 mRNA downstream 152289 69649537 ~ 69675010 (-) False ankrd10b
XM_021597829.2 mRNA downstream 152291 69652533 ~ 69675008 (-) True ankrd10b
XM_021597838.2 mRNA upstream 48262 69875922 ~ 69903855 (-) False xk
XM_036975042.1 mRNA upstream 65291 69892951 ~ 69895131 (-) False LOC110520487
XM_036975043.1 mRNA upstream 65291 69892951 ~ 69895131 (-) False LOC110520487
XM_021583357.2 mRNA upstream 79645 69907305 ~ 69911161 (-) True LOC110504590
XM_021597848.2 mRNA upstream 100001 69927661 ~ 69933360 (-) True asb11
TU330123 other downstream 570755 69256005 ~ 69256544 (-) True G291138
TU329646 other downstream 976445 68846611 ~ 68850854 (-) True G290713
TU329520 other downstream 1102385 68721808 ~ 68724914 (-) True G290602
TU329515 other downstream 1109914 68710367 ~ 68717385 (-) True G290598
TU329467 other downstream 1179679 68626332 ~ 68647620 (-) True G290567
TU330998 other upstream 152686 69980346 ~ 69996605 (-) True G291901
TU331092 other upstream 279880 70107540 ~ 70107950 (-) True G291977
TU332000 other upstream 892376 70720036 ~ 70720591 (-) True G292753
TU332200 other upstream 1199959 71027619 ~ 71040152 (-) True G292919
TU333405 other upstream 2075654 71903314 ~ 71903908 (-) True G293984

Expression Profile