RNA id: TU330425


Basic Information

Item Value
RNA id TU330425
length 215
lncRNA type intronic
GC content 0.34
exon number 1
gene id G291414
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 69837711 ~ 69837925 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATCTTAAAGATATAGGGTCTCTACCCACAGAGATTTCTTTCTGCTTTTTTTtctctggcctccattgatttagtcacccTAATTCTGACATTCAtacaagggtaaaaactccaATAACTTTTGAACAAattatgatagagacatgagGTTTGACCCATAGTTTCTGTTAGAGGAGTATATCTACACAATTCATATTTTACCCAATGGTCAAAAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU330422 lncRNA upstream 4656 69832750 ~ 69833055 (+) True G291411
TU330414 lncRNA upstream 19734 69817578 ~ 69817977 (+) True G291403
TU330415 lncRNA upstream 23343 69814140 ~ 69814368 (+) True G291404
TU330413 lncRNA upstream 23639 69813580 ~ 69814072 (+) True G291402
TU330412 lncRNA upstream 24474 69812733 ~ 69813237 (+) True G291401
TU330389 lncRNA downstream 32931 69870856 ~ 69871336 (+) True G291378
TU330387 lncRNA downstream 33768 69871693 ~ 69946132 (+) True G291376
TU330451 lncRNA downstream 49886 69887811 ~ 69888217 (+) True G291440
TU330456 lncRNA downstream 55930 69893855 ~ 69894931 (+) True G291444
TU330509 lncRNA downstream 133773 69971698 ~ 69971933 (+) True G291490
XM_036975033.1 mRNA upstream 68065 69731759 ~ 69769646 (+) True LOC110504579
XM_036965146.1 mRNA upstream 106054 69712348 ~ 69731657 (+) True LOC110504569
LOC118964360 mRNA upstream 161048 69676510 ~ 69676663 (+) True LOC118964360
XM_021597825.2 mRNA upstream 196988 69634580 ~ 69640723 (+) False LOC110520479
XM_021597835.2 mRNA downstream 23969 69861894 ~ 69870212 (+) False LOC110520485
XM_036975041.1 mRNA downstream 24097 69862022 ~ 69867869 (+) False LOC110520485
XM_021597836.2 mRNA downstream 24097 69862022 ~ 69870212 (+) False LOC110520485
XM_036975039.1 mRNA downstream 24103 69862028 ~ 69867877 (+) False LOC110520485
XM_036975040.1 mRNA downstream 24104 69862029 ~ 69867876 (+) False LOC110520485
TU330321 other upstream 141875 69695395 ~ 69695836 (+) True G291327
TU330151 other upstream 207342 69626343 ~ 69630369 (+) True LOC110520478
TU328723 other upstream 1612405 68223725 ~ 68225306 (+) False G289883
TU328273 other upstream 2075288 67761737 ~ 67762423 (+) True G289517
TU328233 other upstream 2155589 67678862 ~ 67682122 (+) False G289486
TU330385 other downstream 24135 69862060 ~ 69870212 (+) True LOC110520485
TU330486 other downstream 81257 69919182 ~ 69922119 (+) True LOC110504602
TU330474 other downstream 111742 69949667 ~ 69952168 (+) True G291461
TU330553 other downstream 219615 70057540 ~ 70070357 (+) True LOC110520493
TU331609 other downstream 739193 70577118 ~ 70581089 (+) False LOC110520507

Expression Profile