RNA id: TU330451



Basic Information


Item Value
RNA id TU330451
length 218
lncRNA type intronic
GC content 0.41
exon number 2
gene id G291440
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 69887811 ~ 69888217 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CTTAAATCATGGCCAAATTTACCAATGCACTCACCCACGTTTAGTTTCCTGTCCTGAAAAAAAGGTAAGATTCCAGTCAGTATGCTCAAGTCCATTCTTTCCACTCAAAAGATTCTGGCATGAACGCCAGCCAGTAAGGCCACCGAAACGTACAGGTAGGTTATTAACTAGCATAAACAGTCTAGGACGATGACTTTCCATGAAATAATCAAGTTGTA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU330389 lncRNA upstream 16475 69870856 ~ 69871336 (+) True G291378
TU330425 lncRNA upstream 49886 69837711 ~ 69837925 (+) True G291414
TU330422 lncRNA upstream 54756 69832750 ~ 69833055 (+) True G291411
TU330414 lncRNA upstream 69834 69817578 ~ 69817977 (+) True G291403
TU330415 lncRNA upstream 73443 69814140 ~ 69814368 (+) True G291404
TU330456 lncRNA downstream 5638 69893855 ~ 69894931 (+) True G291444
TU330509 lncRNA downstream 83481 69971698 ~ 69971933 (+) True G291490
TU330521 lncRNA downstream 143784 70032001 ~ 70034765 (+) False LOC110520491
TU330526 lncRNA downstream 143784 70032001 ~ 70034765 (+) False LOC110520491
TU330529 lncRNA downstream 143784 70032001 ~ 70034765 (+) False LOC110520491
XM_021597836.2 mRNA upstream 17599 69862022 ~ 69870212 (+) False LOC110520485
XM_021583366.2 mRNA downstream 27593 69915810 ~ 69923807 (+) False LOC110504602
XM_036975046.1 mRNA downstream 92051 69980268 ~ 70034757 (+) False LOC110520491
XM_036975047.1 mRNA downstream 92054 69980271 ~ 70034757 (+) False LOC110520491
XR_002472992.2 mRNA downstream 169166 70057383 ~ 70070331 (+) False LOC110520493
XM_021597860.2 mRNA downstream 169185 70057402 ~ 70070470 (+) False LOC110520493
TU330385 other upstream 17599 69862060 ~ 69870212 (+) True LOC110520485
TU330321 other upstream 191975 69695395 ~ 69695836 (+) True G291327
TU330151 other upstream 257442 69626343 ~ 69630369 (+) True LOC110520478
TU328723 other upstream 1662505 68223725 ~ 68225306 (+) False G289883
TU328273 other upstream 2125388 67761737 ~ 67762423 (+) True G289517
TU330486 other downstream 30965 69919182 ~ 69922119 (+) True LOC110504602
TU330474 other downstream 61450 69949667 ~ 69952168 (+) True G291461
TU330553 other downstream 169323 70057540 ~ 70070357 (+) True LOC110520493
TU331609 other downstream 688901 70577118 ~ 70581089 (+) False LOC110520507
TU331610 other downstream 688901 70577118 ~ 70581089 (+) False LOC110520507

Expression Profile