RNA id: TU330456



Basic Information


Item Value
RNA id TU330456
length 1050
lncRNA type read_through
GC content 0.39
exon number 2
gene id G291444
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 69893855 ~ 69894931 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATCACTATCAACATAAACACCACCTGCAACACTATCAACAAACACTACTTTCAACACTATCAACATAAACACCACCTGCATCACTATCAGCATAAACACCACCTGCATCACTATCAACATAAACACCACCTGCTACACTATCAACATAAACACCACCTGCAACACTATCAACATAAACACCACCTGCATCACTATCAACATAAACATTACCTGCATCACTATCATTATAAACACCACCTGCATCACTATCATCATAAACACAACCTGCATCACTATCATCATAAACACCACCCGCTACACTATCAACATAAACACCACCTGCTACACTATCAACATAAACACCACCTgcaacactatcaacatacatACCACCTGCAACACTATCAACATAAACACCTCCTGCATCACTATCAACATAAACACCACCTGCTACACTATCAACATAAACACCACCTGCAACACTATCAACATAAACACCACCTGCATCACTATCAACATAAACATTACCTGCATCACTATCATTATAAACACCACCTGCATCACTATCATCATAAACACAACCTGCATCACTGTCATCATAAACACCACCTGCTACACTATCAACATAAACACCACCTGCTACACTATCAACATAAACACCACCTgcaacactatcaacatacatACCACCTGCAACACTATCAATATAAACACCACCTAGATCACTATCAACATAAACACCATCTGAATCACTATCAACATAAACACTACCTGCAACACTATCAACATAAACACCACCTAGATCACTATCAACATAAACACCACCTGCAACACTATCAACATAAACCCCACCTGCAACACTATCAACATAAACACCACCTGCAACACTATCAACATAAACACCGCCTTCAACACTATCAACATAAACACCACCTGCAACACTATCAACATAAACACCACCTTCAACACTATCAACATAAACACCACCTGCAACACTATCAACATAAACACCACCTTCAACACTATCAACATAAACACCACCTGCAACACTATCAACATAAACACCACCTG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU330451 lncRNA upstream 5638 69887811 ~ 69888217 (+) True G291440
TU330389 lncRNA upstream 22519 69870856 ~ 69871336 (+) True G291378
TU330425 lncRNA upstream 55930 69837711 ~ 69837925 (+) True G291414
TU330422 lncRNA upstream 60800 69832750 ~ 69833055 (+) True G291411
TU330414 lncRNA upstream 75878 69817578 ~ 69817977 (+) True G291403
TU330509 lncRNA downstream 76767 69971698 ~ 69971933 (+) True G291490
TU330521 lncRNA downstream 137070 70032001 ~ 70034765 (+) False LOC110520491
TU330526 lncRNA downstream 137070 70032001 ~ 70034765 (+) False LOC110520491
TU330529 lncRNA downstream 137070 70032001 ~ 70034765 (+) False LOC110520491
TU330516 lncRNA downstream 137120 70032051 ~ 70034765 (+) False LOC110520491
XM_021597836.2 mRNA upstream 23643 69862022 ~ 69870212 (+) False LOC110520485
XM_021583366.2 mRNA downstream 20879 69915810 ~ 69923807 (+) False LOC110504602
XM_036975046.1 mRNA downstream 85337 69980268 ~ 70034757 (+) False LOC110520491
XM_036975047.1 mRNA downstream 85340 69980271 ~ 70034757 (+) False LOC110520491
XR_002472992.2 mRNA downstream 162452 70057383 ~ 70070331 (+) False LOC110520493
XM_021597860.2 mRNA downstream 162471 70057402 ~ 70070470 (+) False LOC110520493
TU330385 other upstream 23643 69862060 ~ 69870212 (+) True LOC110520485
TU330321 other upstream 198019 69695395 ~ 69695836 (+) True G291327
TU330151 other upstream 263486 69626343 ~ 69630369 (+) True LOC110520478
TU328723 other upstream 1668549 68223725 ~ 68225306 (+) False G289883
TU328273 other upstream 2131432 67761737 ~ 67762423 (+) True G289517
TU330486 other downstream 24251 69919182 ~ 69922119 (+) True LOC110504602
TU330474 other downstream 54736 69949667 ~ 69952168 (+) True G291461
TU330553 other downstream 162609 70057540 ~ 70070357 (+) True LOC110520493
TU331609 other downstream 682187 70577118 ~ 70581089 (+) False LOC110520507
TU331610 other downstream 682187 70577118 ~ 70581089 (+) False LOC110520507

Expression Profile