RNA id: TU330474


Basic Information

Item Value
RNA id TU330474
length 2478
RNA type TUCP
GC content 0.35
exon number 2
gene id G291461
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 69949667 ~ 69952168 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTTAATATTGCGTTTATTTTGACATTTAATCAAATCAAGCTTTTTTATACagaacatttcagacatggacTGCAATGCAATGTGCATTACagaactcacaggcagccagtacAGAGACCTTAAAACCTATGAAATGTGTGCTCTCCGTCTGATCTTGGTCAGTACccatgctgcagcattctgtatgttctgcagttgaccaatggctttcttgggtagaccagacaggagagcaatACAGTAGTCAAACCTGaatgtaataaaagcatggacgagtctctctgtatcagcctgagagagaaacatCCACACCTCAAAATGTTCCTGGTAAAAAGCAATTTTGGTCGcattcctaatgtgtgattcGAAATTGACTTCAGAATATAAAAATAACACTTAGGTTTTTTTTACCTtttgttttatctttattgcctGTGAATTAAAATATGCTGCTAGATTCTCTCgctgtgctttggctccaacaataagtacCTAGGTTTTTGTCTcgatttagctggaggaagttaTTTAACTCACTAAAACAGTCTAATAATGTATCCGTGGAGCTAGAATTCTCTGGTGACGCAGAAATGTGAGGCTGTGTATCATCTGCGTAGCAGTGACAATCAATGCTGTGCTTTAATATAGGGTTTATTATGGCATTTAATATAGGGTTTATTATGGCATTTAATATAGGGTTTATTATGGTATTTAATATAGCGTTTATTATGGCATTTAATATAGCGTTTATTATGGCATTTAATATAGCGTTTATTATGGCATTTAATATAGCGTTTATTATGGCATTTAATATAGGGTTTATTATGGCATTTAATATAGCGTTTATTATGGCATTTAATATAGCGTTTATTATGGCATTTATTATAGGGTTTATTATGGCATTTAATATAGCGTTTATTATGGCATTTAATATAGGGTTTATTATGGCATTTAATATAGCGTTTATTATGGCATTTAATATAGCGTTTATTATGGCATTTAATATAGGGTTTATTATGGCATTTAATATAGCGTTTATTATGGCATTTAATATAGCGTTTATTATGGCATTTAATATAGGGTTTATTATGGCGTTTAATATAGGGTTTATTATGGCATTTAATATAGGGTTTATTATGGCATTTAATATAGGGTTTATCTCATTTCATATTCACAGTACATAGTTTATTTGAAAAAGAAACACCAAgaaggaagaggacagagaattTCAGCTACTTTCCAACAGTACAAACACATAAAAACAACTGAACAATACTTTCCCACACAGAAAAACAGCCAGTATTGTCACTTACAGCATAAAATATGAGTGGTATAAAAGTACTAAAACAGATTGTTCTCCTTTTGGCAATCTGTCTTCATCATTATCAAGCATTTTATCTAAACCAATCCCTTGTCTTGCCAATCTCTTACTGCTTAATGATGACTAACTTCACTGCACCTAACACCCAGGCAACCAAGTATCAACATATGGACTCCAACAATTAACAGTTTAAAATCACTACTTTGATATTTGTACTCAAATAAGCAGGTCATGTGGGTGGAAAGGGGAGAGGTGGGCGGATAATGTATTTGTATAATGTCTGTAGTTTTTTTCTCTCACAAAATAAATATGAACACAGATGTGAAACTTGTATTAGTCCCTCGGGACAAGACCTATAAAAAGTCATTTTATTTCCCTGATTTCCGATCAGCTCTTCCTGTGTTGTAAGCTTAACCAATATGGTTAATAATACAACAAAACGGACCCTGGACCAAAGTGTTACTAATCTTTTGATTTAGTCATTCCATGACATGCTTGTTTCACAGCAagctacataataataataagcaGCAATGAAAACATTGATCATGTCAAATTCTTCACATTATTCAGATAATTAAATTCATATTTAAATGGTGAAATGACTGCTGTACATGAAAGCGAATTATCAACATGAATTATCAACCTGAATTATCAACATGATTCAAATGGGTAACACCAGGAACATGCGGTAGATGTATGTAACAAGAGTTTCCATGATGGCTGTTAACTATAGTAGTCCTGTATCATCTGCTTCTCTTCTTAGAAATGTGAATGCACCTGTAGTTAGTCAACTCTATAATATACAGGCTGCCTTAGGTCTACTTTATTTATTGGGATTTCATTTACTGAGTTCGGCTCATGTTCAGTCCATTGACCAGTCATTTCTCCCATCATGCTGTTCTCCACTTCTTTCACTTCCTGCCACAGAATATGGTTCAGACATGACATTACAATACATTGCTCAATGCTGCTCCACAATGCTACTTTGAACACAGGCATTATTTTAAGTTTAAGTTTGTCTTGTTGCAAGTCACCATCCCTCCATTTTGTCGTCCGTCATTTGAGGAGAGATTGTTGTATCAGAGGGAGAAGATGCTCCACACACTCAGTGTTCATACATGTTCAACTGCTGGGTCACGCTTCTATCCTCTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU330387 lncRNA upstream 3535 69871693 ~ 69946132 (+) True G291376
TU330456 lncRNA upstream 54736 69893855 ~ 69894931 (+) True G291444
TU330451 lncRNA upstream 61450 69887811 ~ 69888217 (+) True G291440
TU330389 lncRNA upstream 78331 69870856 ~ 69871336 (+) True G291378
TU330425 lncRNA upstream 111742 69837711 ~ 69837925 (+) True G291414
TU330509 lncRNA downstream 19530 69971698 ~ 69971933 (+) True G291490
TU330521 lncRNA downstream 79833 70032001 ~ 70034765 (+) False LOC110520491
TU330526 lncRNA downstream 79833 70032001 ~ 70034765 (+) False LOC110520491
TU330529 lncRNA downstream 79833 70032001 ~ 70034765 (+) False LOC110520491
TU330516 lncRNA downstream 79883 70032051 ~ 70034765 (+) False LOC110520491
XM_021583366.2 mRNA upstream 25860 69915810 ~ 69923807 (+) False LOC110504602
XM_021597836.2 mRNA upstream 79455 69862022 ~ 69870212 (+) False LOC110520485
XM_036975046.1 mRNA downstream 28100 69980268 ~ 70034757 (+) False LOC110520491
XM_036975047.1 mRNA downstream 28103 69980271 ~ 70034757 (+) False LOC110520491
XR_002472992.2 mRNA downstream 105215 70057383 ~ 70070331 (+) False LOC110520493
XM_021597860.2 mRNA downstream 105234 70057402 ~ 70070470 (+) False LOC110520493
XM_021597859.2 mRNA downstream 105242 70057410 ~ 70070470 (+) False LOC110520493
TU330486 other upstream 27548 69919182 ~ 69922119 (+) True LOC110504602
TU330385 other upstream 79455 69862060 ~ 69870212 (+) True LOC110520485
TU330321 other upstream 253831 69695395 ~ 69695836 (+) True G291327
TU330151 other upstream 319298 69626343 ~ 69630369 (+) True LOC110520478
TU328723 other upstream 1724361 68223725 ~ 68225306 (+) False G289883
TU330553 other downstream 105372 70057540 ~ 70070357 (+) True LOC110520493
TU331609 other downstream 624950 70577118 ~ 70581089 (+) False LOC110520507
TU331610 other downstream 624950 70577118 ~ 70581089 (+) False LOC110520507
TU331619 other downstream 624950 70577118 ~ 70581089 (+) False LOC110520507
TU332513 other downstream 1414015 71366183 ~ 71366423 (+) True G293204

Expression Profile