RNA id: TU330978


Basic Information

Item Value
RNA id TU330978
length 2967
lncRNA type antisense_over
GC content 0.44
exon number 3
gene id G291884
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 70030764 ~ 70034763 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTATGTACATTCAACATTTTATTGATGGGATAGTGTAGAAAGCATTCTCAGTCTAAGCAAATTATTTGTATAGGTACACAGAAAAAGTCACAGAATGAACAAATGAAACCACTAACCCCTGGAGATACCCTGTACAAGTATCCTTGATAACACCAAAACATTTACCTGATTTAAGAGCTTCAGTTTGTGTGTAGGGAGGGAGTGTAGTAGTATGTAGATCTGTGGCATAATTGCACAATATGAATGTCACATTCATGTCTATTGGAGGCTCCATTTTGGGTATGGGGAATGTCTCGTCTACTACGGCCGCAATACTGATCCCAGATCTGGGGTGCGTTCAGCTCGGTGAAACATTCAGAATGTAACACAAAACTACCTGACATAATGACATCTGTTCCACATAACACATTTATATCTGAAAGTCCTGTGCAGTTGCTCCTTTCTGAACAGTGTCCCTGTATTTTGCCTCACGCACATTGTCCCGAGATCAGTATTTCTTTAGCCTCTGCTTTTAAAGCCAGGATGTCTGAGACATGAGAGatttgacaaaacaagcaagaggGGGATTCCCACCACAGAACAAGGAACAGTTTTTCTTATCTTTCCTTGGTTGTTTGATACAtgtacatcaataagggatcatagctttcacctggtcagtctatgtcatggaaaaataGTGTATGTTCTGTGTGAGACATTGTGGAGGGAATAAGTGTTTGATGATCAGAAAGACAATAGATTAGAATGTACAAATCTGACACACCcaatcccccccctctctctctcaattcaacatAGTTCACACACCAAGCCGACAGCATGGATAGAGAAGCAGGGCTGGTTGTGGGGGTTGAGGTCTATGGGAtagacagaggaaaggagagatcgAAAAAGAGCCTGAAAGCCTGAGaaagaaaacataataatgatTTCTGTTTCCATTAATGATGTTCACAGACTATATAGGAATGAGGAAAGATCGGGTGGAATGCTGAGATTTCTGGAATGATGAATGGAGCTGAAACAATTCCTAGTCGTGGAATATTTAAGGGACATAAACCAACAAACAGAGCAGTAACACCAGTAACACCCAGACTAAATGAAACAGATCGACTTCCTTTCAGATACTATTACACGTCATTATATTAGCTACATGTAGATAGAGATAATTGGGTCCATGTAGGTAACACAGAGCGAGGAAGGGGCTGGAAACAAAGGAGAGCACAGGTTCTGTTTAAAGATTGTCGCAGTGACAAAGCGGACCAGattctaaatacttttttttttctctcttcttcaTATCACAAGATCACAAAGAAGACACAGAAAATGTACAATCCTGCTAAAAGTCTATATGAGAGGCCCAGTACTGCGACAGGAGCCAGCTTCTCTACGTATATCTGGCATCAATATCACCATGCACTACATATAGTTACAGCTAGTTTTTTTCTGCCTTATTTCAATACATTACgcacaaaataaaaacattcaatATTTCTTTGCCTTTTACATATTTCTCATGTATtagttatatatttttgtttttttatacatttttctgGAAAAAAAACCTGAAACGCTTGTGGTATAATCCCACAGAGAGGAGCTCAGGGCAGACTGAGCCCCTCCTCCCTTGTGGTATAATCCCACAGAGAGGAGCTCAGGGCAGACTGAGCCCCTCCTCCCTTGTGGTATAATCCCACAGAGAGGAGCTCAGGGCAGACTGAGCCCCTCCTCCCTTGTGGTATAATCCCACAGAGAGGAGCTCAGGGCAGACTGAGCAACCTCGTCCCTTGTGGTATAATCCCACAGAGAGGAGCTCAGGGCAGACTGAGCCCCTCCTCCCTTGTGGTATAATCCCACAGAGAGGAGCTCAGGGCAGACTGAGCCCCTCCTCCCTTGTGGTATAATCCCACAGAGAGGAGCTCAGGGCAGACTGAGCCCCTCCTCCCTTCGCTAGTGTTAAGAGCTGTTATGTCATCACTAAACACAGCACAGCTGtcatctgagagagagggaggggagaagagtgcgtgggagagatggagggggaggggagagtgcGTCAGAGTGAGTGAGGAAGAGGCAGGAAGATTGCAGGGATATTTGGGGCCTCTGTTTCACCCTCTTAGACCTGCGAGTGCTATCCTGAGGGGGAGGACTCACCCCCAGATAGACGGACAGATGAATCAATCAATGAGCTTCTCTGTTCTGTACAAACACTACAGGATATTATAGAAAAATATGCAGGTGAATGAGGATATCCTTGTCTGACCAATAGTAGCTATGAATGTTGATGTGCTGCACTTTACGAGGAAAGGATGAAGTGTGGCTAGGTTGTATTTCAGCCCCCAGCTCTTTGGCACTACCCCTGGATAGCTGGAAGTAATATAACTATTTCAAACCCAATTCATTCTAGATTTTTCTGGCACTTCAGTCATACTGGTTTCACCTACTCAGTCCTTTCAGATCCATTGACAGCAATAGAGTAGGAGTTAGAAGGGTTTATGGAACAAAATGGAACGGGCCCTAGGTGTGAGGGGTTTATGGACCAAAATGGAACGGGCCCTAGGTGTGAGGGGTTAAAGGAAGTTCAGGGTCTGGGAGGGGTCAAAGGGTAGCTCCTTAGTTCTGCATCTGTTCGAAGAACTTGTAGGTGGGGTTCTCATAGCCATTCTGCTGCATCTTGGACAGGTGACGCTCCTCTGGGgtcactgcagcatccacctgcTCGATGATTCCGTGGTGGATGGAGGTATACTGCTTCTTCCTCAGCATAATCAGAGAGATGATGATGACTGTCGCTATGACAACCCCGCCCACCATCAGGCCGATGATGGCACCCTTGTTGGAGCCTACATCCTCAGCAAAGAACACCTGGTAATAATCAATACAACACCTATCAATCAACCTGGAGGTGTTGAGTGTTTCTgcagttatatactgtatattgtgaaGGCAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU330993 lncRNA downstream 58839 69971661 ~ 69971925 (-) True G291896
TU330957 lncRNA downstream 95522 69933859 ~ 69935242 (-) True piga
TU330927 lncRNA downstream 135721 69893367 ~ 69895043 (-) False LOC110520487
TU331354 lncRNA upstream 85645 70120408 ~ 70120729 (-) True G292214
TU331351 lncRNA upstream 88096 70122859 ~ 70164009 (-) True G292211
TU331355 lncRNA upstream 93818 70128581 ~ 70129124 (-) True G292215
TU331398 lncRNA upstream 174804 70209567 ~ 70210180 (-) True G292252
TU331402 lncRNA upstream 180636 70215399 ~ 70215747 (-) True G292256
XM_021597853.2 mRNA downstream 59591 69949665 ~ 69971173 (-) True LOC110520490
XM_021597849.2 mRNA downstream 59592 69949665 ~ 69971172 (-) False LOC110520490
XM_021597850.2 mRNA downstream 59593 69949665 ~ 69971171 (-) False LOC110520490
XM_021597851.2 mRNA downstream 59593 69949665 ~ 69971171 (-) False LOC110520490
XM_036975045.1 mRNA downstream 91908 69933697 ~ 69938856 (-) False piga
XM_021597856.2 mRNA upstream 277 70035040 ~ 70048383 (-) False LOC110520492
XM_021597858.2 mRNA upstream 277 70035040 ~ 70048383 (-) False LOC110520492
XM_021597857.2 mRNA upstream 277 70035040 ~ 70048393 (-) True LOC110520492
XM_036975048.1 mRNA upstream 90535 70125298 ~ 70135532 (-) True LOC110520496
LOC118964359 mRNA upstream 185567 70220330 ~ 70220464 (-) True LOC118964359
TU330998 other downstream 34159 69980346 ~ 69996605 (-) True G291901
TU330123 other downstream 774220 69256005 ~ 69256544 (-) True G291138
TU329646 other downstream 1179910 68846611 ~ 68850854 (-) True G290713
TU329520 other downstream 1305850 68721808 ~ 68724914 (-) True G290602
TU329515 other downstream 1313379 68710367 ~ 68717385 (-) True G290598
TU331092 other upstream 72777 70107540 ~ 70107950 (-) True G291977
TU332000 other upstream 685273 70720036 ~ 70720591 (-) True G292753
TU332200 other upstream 992856 71027619 ~ 71040152 (-) True G292919
TU333405 other upstream 1868551 71903314 ~ 71903908 (-) True G293984
TU333434 other upstream 2138286 72173049 ~ 72206798 (-) True LOC110504660

Expression Profile