RNA id: TU331444



Basic Information


Item Value
RNA id TU331444
length 342
lncRNA type intronic
GC content 0.43
exon number 1
gene id G292286
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 70296475 ~ 70296816 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gccaccttttgctgcgattacagctgtaagtcgcttggggtatgtctctatcagttttgcacatcgagagactgacattttttcccattcctccttgcaaaacagctcaagctcagtgaggttggatggagagcatttgtgaacagcagttttcagttctttccacagattctcgattggattcaggtctggactttgacttggccattctacacctggatatgtttatttttgaaccattccattgtagattttgctttatgttttggatcattgtcttgttggaagacaaatctccgtcccagtctcaggtcttttgcagactccatcaggttttcttcc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU331435 lncRNA downstream 12287 70283656 ~ 70284188 (-) True G292277
TU331434 lncRNA downstream 12462 70283656 ~ 70284013 (-) False G292277
TU331428 lncRNA downstream 43886 70243869 ~ 70252589 (-) True G292272
TU331431 lncRNA downstream 47509 70248185 ~ 70248966 (-) True G292274
TU331402 lncRNA downstream 80728 70215399 ~ 70215747 (-) True G292256
TU331452 lncRNA upstream 13919 70310735 ~ 70311012 (-) True G292294
TU331453 lncRNA upstream 14296 70311112 ~ 70311344 (-) True G292295
TU331458 lncRNA upstream 18794 70315610 ~ 70315895 (-) True G292300
TU331472 lncRNA upstream 48711 70345527 ~ 70346693 (-) True G292313
TU331476 lncRNA upstream 62316 70359132 ~ 70359439 (-) True G292317
LOC118964359 mRNA downstream 76011 70220330 ~ 70220464 (-) True LOC118964359
XM_036975048.1 mRNA downstream 160943 70125298 ~ 70135532 (-) True LOC110520496
XM_021597857.2 mRNA downstream 248082 70035040 ~ 70048393 (-) True LOC110520492
XM_021597856.2 mRNA downstream 248092 70035040 ~ 70048383 (-) False LOC110520492
XM_021597886.2 mRNA upstream 474340 70771156 ~ 70806536 (-) False LOC110520510
XM_036975066.1 mRNA upstream 474340 70771156 ~ 70806539 (-) False LOC110520510
XM_036975067.1 mRNA upstream 474340 70771156 ~ 70806540 (-) True LOC110520510
XM_021597888.2 mRNA upstream 510533 70807349 ~ 70810049 (-) True jagn1a
XM_021597890.2 mRNA upstream 513788 70810604 ~ 70837491 (-) True LOC110520512
TU331092 other downstream 188525 70107540 ~ 70107950 (-) True G291977
TU330998 other downstream 299870 69980346 ~ 69996605 (-) True G291901
TU330123 other downstream 1039931 69256005 ~ 69256544 (-) True G291138
TU329646 other downstream 1445621 68846611 ~ 68850854 (-) True G290713
TU329520 other downstream 1571561 68721808 ~ 68724914 (-) True G290602
TU332000 other upstream 423220 70720036 ~ 70720591 (-) True G292753
TU332200 other upstream 730803 71027619 ~ 71040152 (-) True G292919
TU333405 other upstream 1606498 71903314 ~ 71903908 (-) True G293984
TU333434 other upstream 1876233 72173049 ~ 72206798 (-) True LOC110504660
TU333986 other upstream 2274433 72571249 ~ 72575432 (-) True G294451

Expression Profile