RNA id: TU331452



Basic Information


Item Value
RNA id TU331452
length 278
lncRNA type intronic
GC content 0.43
exon number 1
gene id G292294
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 70310735 ~ 70311012 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gtggaccaagatgcagtgtGGTATGGTTCCATCCTCTTTATGAAGTGAAACTCAAAGAAAACAATAAATGCAAAACTAAATGTGAAGCTGCTATAGTGCTCACAGGCTATAGTGCTCAcatacatagtcaagatcccacaaagcacaaaggagaaatggctgcctaaatatgatccccaatcagagacaacgataaacagctgcctctgattgggaaccataccaggccaacatagaaatataatcacctagatgacccaccctagtcacaccccgac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU331444 lncRNA downstream 13919 70296475 ~ 70296816 (-) True G292286
TU331435 lncRNA downstream 26547 70283656 ~ 70284188 (-) True G292277
TU331434 lncRNA downstream 26722 70283656 ~ 70284013 (-) False G292277
TU331428 lncRNA downstream 58146 70243869 ~ 70252589 (-) True G292272
TU331431 lncRNA downstream 61769 70248185 ~ 70248966 (-) True G292274
TU331453 lncRNA upstream 100 70311112 ~ 70311344 (-) True G292295
TU331458 lncRNA upstream 4598 70315610 ~ 70315895 (-) True G292300
TU331472 lncRNA upstream 34515 70345527 ~ 70346693 (-) True G292313
TU331476 lncRNA upstream 48120 70359132 ~ 70359439 (-) True G292317
TU331477 lncRNA upstream 51059 70362071 ~ 70362333 (-) True G292318
LOC118964359 mRNA downstream 90271 70220330 ~ 70220464 (-) True LOC118964359
XM_036975048.1 mRNA downstream 175203 70125298 ~ 70135532 (-) True LOC110520496
XM_021597857.2 mRNA downstream 262342 70035040 ~ 70048393 (-) True LOC110520492
XM_021597856.2 mRNA downstream 262352 70035040 ~ 70048383 (-) False LOC110520492
XM_021597886.2 mRNA upstream 460144 70771156 ~ 70806536 (-) False LOC110520510
XM_036975066.1 mRNA upstream 460144 70771156 ~ 70806539 (-) False LOC110520510
XM_036975067.1 mRNA upstream 460144 70771156 ~ 70806540 (-) True LOC110520510
XM_021597888.2 mRNA upstream 496337 70807349 ~ 70810049 (-) True jagn1a
XM_021597890.2 mRNA upstream 499592 70810604 ~ 70837491 (-) True LOC110520512
TU331092 other downstream 202785 70107540 ~ 70107950 (-) True G291977
TU330998 other downstream 314130 69980346 ~ 69996605 (-) True G291901
TU330123 other downstream 1054191 69256005 ~ 69256544 (-) True G291138
TU329646 other downstream 1459881 68846611 ~ 68850854 (-) True G290713
TU329520 other downstream 1585821 68721808 ~ 68724914 (-) True G290602
TU332000 other upstream 409024 70720036 ~ 70720591 (-) True G292753
TU332200 other upstream 716607 71027619 ~ 71040152 (-) True G292919
TU333405 other upstream 1592302 71903314 ~ 71903908 (-) True G293984
TU333434 other upstream 1862037 72173049 ~ 72206798 (-) True LOC110504660
TU333986 other upstream 2260237 72571249 ~ 72575432 (-) True G294451

Expression Profile