RNA id: TCONS_00030321


Basic Information

Item Value
RNA id TCONS_00030321
length 963
lncRNA type inter_gene
GC content 0.41
exon number 4
gene id XLOC_014967
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 39427180 ~ 39579002 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ttttaaaacacggATAACACATTCTATACGAGCTGACTGGACACGATGATATACAATACACCGAACAACACTTTTCATCGACAGACAGTAAGACAGGTGTCTCTAGCTGTATGTAGGGACACTTCATATGCTGTCGTTCCTCTCCAGATGTCTGCATAGTGCTTGAAAGAGGAGAAGAGCTGAAAGGGGCTGCAATGTTATCTCTCTCAGACACACGCAATTTGGCCGGCAGTTTCTCCAGCCACCTTCTGATTCAATCAATAAGCAACAGGTCAGAGAGAGATGCCGCTGAGCCGGGTGTTCATTTGCAGGTTCACAGGGGCTGACAGTGTTACAGGTTTAGGAAGGTGCTGAGGAAAGCTCACCTTCACATCTCATTGCAGCATCTGTTTGGAGTCGGGCCTGCCACGCCGCTGCCCTTTCACTGCAGTGTCTTCTTTAATTAGGCCAGAATGCCCAGAGACAACCAATAATCTGTCATCCCATATAAACACGTTCTGGGAAGTTCAATTATTTTAACCCCCTGTCAAATGTAGCTGCAGGCCGACGGGTGCACTGGTGTGTGTCTGTatgagtctctgtgtgtgtgccaGAGACAGACGTGTAAATGAGGTGCATATAAGTGTTTTTGTCACGTTTGGTTGGTTTCAAATATTGGTTGGTTTTAAGCTCAAATTGTGGTGTTGTTTCAGCATTTGCTGTGTTATCTGACAGTTTATGGTACCATTTTGAGCACAATAATGTATTATTTAgagttatatataatatataagtcAGAATATTAGCCCTGCcctggaattattagccccactgttaatttttttccctaattgctgtttaacagagagaaggttttcttaacacattttttaaacataatagttttaataactcatctctaataacagatttgttttatctttgccatgatgacagtacataatattttactagatattttca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00030320 lncRNA downstream 743703 38680899 ~ 38688614 (-) True XLOC_014964
TCONS_00029500 lncRNA downstream 945042 38482489 ~ 38487275 (-) False XLOC_014963
TCONS_00030319 lncRNA downstream 1059319 38323275 ~ 38372998 (-) True XLOC_014959
TCONS_00030318 lncRNA downstream 1853602 37577852 ~ 37578715 (-) True XLOC_014955
TCONS_00030317 lncRNA downstream 1860451 37569624 ~ 37571866 (-) True XLOC_014954
TCONS_00029509 lncRNA upstream 9693 39588596 ~ 39589155 (-) True XLOC_014968
TCONS_00030322 lncRNA upstream 16526 39595429 ~ 39602691 (-) True XLOC_014969
TCONS_00029792 lncRNA upstream 175789 39754692 ~ 39755650 (-) False XLOC_014970
TCONS_00030323 lncRNA upstream 175873 39754776 ~ 39757506 (-) False XLOC_014970
TCONS_00030324 lncRNA upstream 175873 39754776 ~ 39758129 (-) False XLOC_014970
TCONS_00029502 mRNA downstream 559667 38766613 ~ 38872650 (-) False XLOC_014965
TCONS_00029504 mRNA downstream 601597 38793238 ~ 38830720 (-) True XLOC_014965
TCONS_00029503 mRNA downstream 601735 38783225 ~ 38830582 (-) False XLOC_014965
TCONS_00029499 mRNA downstream 820503 38474567 ~ 38611814 (-) False XLOC_014963
TCONS_00029498 mRNA downstream 892647 38473758 ~ 38539670 (-) False XLOC_014963
TCONS_00029510 mRNA upstream 588460 40167363 ~ 40175800 (-) True XLOC_014971
TCONS_00029511 mRNA upstream 603738 40182641 ~ 40186328 (-) False XLOC_014972
TCONS_00029513 mRNA upstream 607774 40186677 ~ 40192249 (-) False XLOC_014973
TCONS_00029514 mRNA upstream 608625 40187528 ~ 40191358 (-) True XLOC_014973
TCONS_00029515 mRNA upstream 617559 40196462 ~ 40199081 (-) False XLOC_014974
TCONS_00029505 other downstream 228582 39203618 ~ 39203735 (-) True XLOC_014966
TCONS_00029497 other downstream 967904 38464295 ~ 38464413 (-) True XLOC_014962
TCONS_00029496 other downstream 968068 38464127 ~ 38464249 (-) True XLOC_014961
TCONS_00029494 other downstream 1370193 38062000 ~ 38062124 (-) True XLOC_014958
TCONS_00029493 other downstream 1403699 38028498 ~ 38028618 (-) True XLOC_014957
TCONS_00029512 other upstream 603831 40182734 ~ 40186263 (-) True XLOC_014972
TCONS_00029518 other upstream 1057669 40636572 ~ 40636691 (-) True XLOC_014976
TCONS_00029522 other upstream 1202265 40781168 ~ 40781271 (-) True XLOC_014978
TCONS_00029535 other upstream 1773919 41352822 ~ 41371978 (-) False XLOC_014985
TCONS_00029546 other upstream 2594211 42173114 ~ 42173228 (-) True XLOC_014994

Expression Profile

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