RNA id: TU331589


Basic Information

Item Value
RNA id TU331589
length 1004
lncRNA type intronic
GC content 0.47
exon number 2
gene id G292404
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 70520225 ~ 70521267 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGCCACACATCACAACAGCGCTGTATGTACGCGTGCCAGGGCCAGAGAGTGATCCATGGATCGAGTGGACGGGAGCCGCAGGGACATCTAAGCACCGATAAACAGAGAGGAGGAAAGCTATGCATCACACGCAAACATAAATAGCAATACACTTCTGGCTATAAGTCAGTGGTGAAGAGCTGAGCAGCATGTAGGTAGAAGCCATGTGTAACACGAGGCTGAGCAGCATGTAGGTAGAAGCCATGTGTAACACGAGGCTGAGCAGCATGTAGGTAGAAGCCATGTGTAACACGAGGCTGAGCAGCATGTAGGTAGAAGCCATGTGTAACATGAGGCTGAGCAGCATGTAGGTAGAAGCCATGTGTAACATGAGGCTGAGCAGCATGTAGGTAGAAGCCATGTGTAACATGAGGCTGAGCAGCATGTAGGTAGAAGCCATGTGTAACATGAGGCTGAGCAGCATGAAGCCATGTGTAACATGAGGCTGAGCAGCATGTAGGTAGAAGCCATATGTAACATGAGGCTGAGCCCatgtgccagagagagagatgaagacatcCACCCAGTCTCTGCTCATTACCATTTAAAACGCTgaaagcgagggagggaggaagagaaataAAAAGcgggggaggaagagagtgggCTTTCATATGCAGCGGCATGGAGGACAAAACTAAACCAACATGAAATATGCAGAACACCGGGTGTCAAGGTGTGTGTACGCACGTGTTAGTGTTGTCATGATACCAGAATGTTCATTACCATTACGATACCAAAACAATACCACATCAACAAAAGGCATATTCACCAAAGTCCCAGAATGGCACTTGAGCCAGACAGATCTTGAGTTCAATATCATTTATTTGAATGGTTCATCTATTGATAACCTGGGTAAATCAAGATGCAGGGTTCTAAAGTGCGAACAACTAAATATTTCGCTGTGCGTGTTGTATTTTGCGCGACCAGGAGTTGTATTTTGGGAGCACTGCACAACCAGGAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU331584 lncRNA downstream 5351 70508687 ~ 70514874 (-) True G292402
TU331537 lncRNA downstream 61473 70458542 ~ 70458752 (-) True G292371
TU331532 lncRNA downstream 64326 70455401 ~ 70455899 (-) True G292366
TU331486 lncRNA downstream 95419 70415892 ~ 70424806 (-) True G292327
TU331480 lncRNA downstream 143026 70376978 ~ 70377199 (-) True G292321
TU331552 lncRNA upstream 34234 70555501 ~ 70564655 (-) True G292384
TU331606 lncRNA upstream 51912 70573179 ~ 70574259 (-) True G292420
TU331906 lncRNA upstream 58157 70579424 ~ 70581094 (-) True G292669
TU331923 lncRNA upstream 92693 70613960 ~ 70615548 (-) True G292686
TU332027 lncRNA upstream 222075 70743342 ~ 70744122 (-) True G292773
LOC118964359 mRNA downstream 299761 70220330 ~ 70220464 (-) True LOC118964359
XM_036975048.1 mRNA downstream 384693 70125298 ~ 70135532 (-) True LOC110520496
XM_021597857.2 mRNA downstream 471832 70035040 ~ 70048393 (-) True LOC110520492
XM_021597856.2 mRNA downstream 471842 70035040 ~ 70048383 (-) False LOC110520492
XM_021597886.2 mRNA upstream 249889 70771156 ~ 70806536 (-) False LOC110520510
XM_036975066.1 mRNA upstream 249889 70771156 ~ 70806539 (-) False LOC110520510
XM_036975067.1 mRNA upstream 249889 70771156 ~ 70806540 (-) True LOC110520510
XM_021597888.2 mRNA upstream 286082 70807349 ~ 70810049 (-) True jagn1a
XM_021597890.2 mRNA upstream 289337 70810604 ~ 70837491 (-) True LOC110520512
TU331092 other downstream 412275 70107540 ~ 70107950 (-) True G291977
TU330998 other downstream 523620 69980346 ~ 69996605 (-) True G291901
TU330123 other downstream 1263681 69256005 ~ 69256544 (-) True G291138
TU329646 other downstream 1669371 68846611 ~ 68850854 (-) True G290713
TU329520 other downstream 1795311 68721808 ~ 68724914 (-) True G290602
TU332000 other upstream 198769 70720036 ~ 70720591 (-) True G292753
TU332200 other upstream 506352 71027619 ~ 71040152 (-) True G292919
TU333405 other upstream 1382047 71903314 ~ 71903908 (-) True G293984
TU333434 other upstream 1651782 72173049 ~ 72206798 (-) True LOC110504660
TU333986 other upstream 2049982 72571249 ~ 72575432 (-) True G294451

Expression Profile