RNA id: TU331923


Basic Information

Item Value
RNA id TU331923
length 1299
lncRNA type antisense_over
GC content 0.40
exon number 2
gene id G292686
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 70613960 ~ 70615548 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gagaaaggatggagggataaagaagttataaaaggtgtgtgtgtgtatgacactGACCTCCTTGAGCCTCCTGTTCTGTGGCTGGAGTTGAGGTGCTGTGGAAAAACAACAGTCACTCACAGTTGAGAGGTTTCCCTCAGagatccaatcaaatcaaattataataGTTAAGAAGCACAAAACTATCTGGTGTTCTACTTGTAGTGGAGCCATAGAGATAGATACCATGTATCTGCAGCCATAGAGGTAGATACTGTGTATCTGCAGCCATAGAGATAGATACTGTGTATCTGCAGCCATAGAGATAGATACTGTGTATCTGCAGCCATAGAGGTAGATACTGTGTATCTGCAGCCATAGAGATAGATACTGTGTATCTGCAGCCATAGAGATAGATACTGTGTATCTGCAGCCATAGAGATAGATACTGTGTATCTGCAGCcatagagatacagtagataccgTTTATCTGTTTATACaatgtgccaagcttttagcgtcatacccaagaaactCGAgggtgtaatcactgccaaaggtgcttcaacaaagtactgagtaaagggtctgaatacttatgtaaatgtgatatttccgtttttaattttgaatgcatttgcaaacatttctagaaacctgtttttgcttcgtcattatggggtgttgtgtgtagattgatgaggattattATTTTTTGGATGCATTTAAGTATAAGGGGGTAACAtatcaaaatgtgtaaaaagtcaaggggtctgaaaatgTTCCCAAATGAACTGTACGGCCACAGCAacgggggagaggatgaggagtaaTATGGCCAGGTAAGTTTGAAGAACATTCAGAACTTTACCTGCACATATGTAGCCATGAGTTGTTGGGCTCACTACGGTTGGTGGAGcaggagtacagagagagagcagcaatgGGGAAAAGAATGAGACACATGTAAGACAAGGGTAATGCACAGTGAATACGCTCCAAGAAATGTTACAATGGCAATGAAAGTAACTACGACAGGATTGCATACTTTACCTTGTTGACCTTGTCAGCAACATTCTCTGAAATGGCAAAGATGGAAGACAGAAATGATACAACAGCAAGTAACGATTGAAGCGTGAATATagtagttacacacacacacatacaaaataaCAGCTGAAAGCCATCACAATTTGGATGAATAACGATGTGGAAGTtgcagacatacagtaccagtcaaacgtttggacacacctactcaatgcAGTCATGACACACACCTCATGTTTATATGGCTGTTTATATGGCTGTTTATATGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU331906 lncRNA downstream 32866 70579424 ~ 70581094 (-) True G292669
TU331606 lncRNA downstream 39701 70573179 ~ 70574259 (-) True G292420
TU331552 lncRNA downstream 49305 70555501 ~ 70564655 (-) True G292384
TU331589 lncRNA downstream 92693 70520225 ~ 70521267 (-) True G292404
TU331584 lncRNA downstream 99086 70508687 ~ 70514874 (-) True G292402
TU332027 lncRNA upstream 127794 70743342 ~ 70744122 (-) True G292773
TU332146 lncRNA upstream 333849 70949397 ~ 70949788 (-) False G292869
TU332147 lncRNA upstream 333849 70949397 ~ 70949788 (-) False G292869
TU332148 lncRNA upstream 333849 70949397 ~ 70949788 (-) True G292869
TU332208 lncRNA upstream 425612 71041160 ~ 71041699 (-) True G292927
LOC118964359 mRNA downstream 393496 70220330 ~ 70220464 (-) True LOC118964359
XM_036975048.1 mRNA downstream 478428 70125298 ~ 70135532 (-) True LOC110520496
XM_021597857.2 mRNA downstream 565567 70035040 ~ 70048393 (-) True LOC110520492
XM_021597856.2 mRNA downstream 565577 70035040 ~ 70048383 (-) False LOC110520492
XM_021597886.2 mRNA upstream 155608 70771156 ~ 70806536 (-) False LOC110520510
XM_036975066.1 mRNA upstream 155608 70771156 ~ 70806539 (-) False LOC110520510
XM_036975067.1 mRNA upstream 155608 70771156 ~ 70806540 (-) True LOC110520510
XM_021597888.2 mRNA upstream 191801 70807349 ~ 70810049 (-) True jagn1a
XM_021597890.2 mRNA upstream 195056 70810604 ~ 70837491 (-) True LOC110520512
TU331092 other downstream 506010 70107540 ~ 70107950 (-) True G291977
TU330998 other downstream 617355 69980346 ~ 69996605 (-) True G291901
TU330123 other downstream 1357416 69256005 ~ 69256544 (-) True G291138
TU329646 other downstream 1763106 68846611 ~ 68850854 (-) True G290713
TU329520 other downstream 1889046 68721808 ~ 68724914 (-) True G290602
TU332000 other upstream 104488 70720036 ~ 70720591 (-) True G292753
TU332200 other upstream 412071 71027619 ~ 71040152 (-) True G292919
TU333405 other upstream 1287766 71903314 ~ 71903908 (-) True G293984
TU333434 other upstream 1557501 72173049 ~ 72206798 (-) True LOC110504660
TU333986 other upstream 1955701 72571249 ~ 72575432 (-) True G294451

Expression Profile