RNA id: TU332027



Basic Information


Item Value
RNA id TU332027
length 212
lncRNA type antisense_over
GC content 0.48
exon number 2
gene id G292773
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 70743342 ~ 70744122 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GGCAGAGAGCTGAACACAGAAGAGTTGTCACCTGGCTCATTACGAGTGGCTACAGAGAGATGGATGATGAGATTGAGAAACAacaaaatttgtccattggactgccagatggtgaagcgtgattcatcactccagagaacatgtttccactgctccagagtctaatggcggcgagctttacaccactccagccaacgtttggcattgcacat

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU331923 lncRNA downstream 127794 70613960 ~ 70615548 (-) True G292686
TU331906 lncRNA downstream 162248 70579424 ~ 70581094 (-) True G292669
TU331606 lncRNA downstream 169083 70573179 ~ 70574259 (-) True G292420
TU331552 lncRNA downstream 178687 70555501 ~ 70564655 (-) True G292384
TU331589 lncRNA downstream 222075 70520225 ~ 70521267 (-) True G292404
TU332146 lncRNA upstream 205275 70949397 ~ 70949788 (-) False G292869
TU332147 lncRNA upstream 205275 70949397 ~ 70949788 (-) False G292869
TU332148 lncRNA upstream 205275 70949397 ~ 70949788 (-) True G292869
TU332208 lncRNA upstream 297038 71041160 ~ 71041699 (-) True G292927
TU332212 lncRNA upstream 299518 71043640 ~ 71043881 (-) True G292931
LOC118964359 mRNA downstream 522878 70220330 ~ 70220464 (-) True LOC118964359
XM_036975048.1 mRNA downstream 607810 70125298 ~ 70135532 (-) True LOC110520496
XM_021597857.2 mRNA downstream 694949 70035040 ~ 70048393 (-) True LOC110520492
XM_021597856.2 mRNA downstream 694959 70035040 ~ 70048383 (-) False LOC110520492
XM_021597886.2 mRNA upstream 27034 70771156 ~ 70806536 (-) False LOC110520510
XM_036975066.1 mRNA upstream 27034 70771156 ~ 70806539 (-) False LOC110520510
XM_036975067.1 mRNA upstream 27034 70771156 ~ 70806540 (-) True LOC110520510
XM_021597888.2 mRNA upstream 63227 70807349 ~ 70810049 (-) True jagn1a
XM_021597890.2 mRNA upstream 66482 70810604 ~ 70837491 (-) True LOC110520512
TU332000 other downstream 22751 70720036 ~ 70720591 (-) True G292753
TU331092 other downstream 635392 70107540 ~ 70107950 (-) True G291977
TU330998 other downstream 746737 69980346 ~ 69996605 (-) True G291901
TU330123 other downstream 1486798 69256005 ~ 69256544 (-) True G291138
TU329646 other downstream 1892488 68846611 ~ 68850854 (-) True G290713
TU332200 other upstream 283497 71027619 ~ 71040152 (-) True G292919
TU333405 other upstream 1159192 71903314 ~ 71903908 (-) True G293984
TU333434 other upstream 1428927 72173049 ~ 72206798 (-) True LOC110504660
TU333986 other upstream 1827127 72571249 ~ 72575432 (-) True G294451
TU334284 other upstream 2031285 72775407 ~ 72776607 (-) True G294697

Expression Profile