RNA id: TCONS_00030322


Basic Information

Item Value
RNA id TCONS_00030322
length 7160
lncRNA type inter_gene
GC content 0.33
exon number 2
gene id XLOC_014969
representative True

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 39595429 ~ 39602691 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCAGACACTGAGTCCTCACATGCAGAATCACACCACATGCTgcatatgtatatactgtaaatactgtatatagttCTAGAGCAAGTTTACAAGTGGTTTTCTGAGCGGTTGTTCTCATGTCGCTGGTCGGTCGCTGGACTCCTCTGGGTGTTTCGATGCGTTTAGTGATTCGCCGTGTCtggtaggttaggttagggtccctcacacggtttgcagcttgacgtgctgtgagggcttgtgtgcatcagtgatgctgagagcttcaccactggtacttcacagataccggcagggtcacccatagtggacaggtctcagctgagatgcccgactaagacaaaccGGCAGATTCTGGACCACAGAAGATCATACACTGAAGACAATGCCAACAACATCAGAATTAAGAAGACACAGGTGAAAGTGGAACAATCGACTGTacatgacaaaataaaataaataggtagaaataaatttaataaataaaaaagttaaggttaacaacagtgttgtattttttttcagcactcttttatattatattatattatattatattatattatattatattatattatattatattatattatattatattatattatattatattgtattgtattatattattttatattatattatattatattatattatattatattatattatattatattatattatattatattatattatattatattgtattgtattatattattttatattatattatattattttatattatattatattattttatattatattatattatattatattatattatattatattgtattgtattgtattatattatattatattatattatattatattatattatattatattatattatattatattatattatactatattatattatattataatatattatattatattatattatattatattatattaaattatattatattatattatattatattattttatattatattatattatattatattatattatattatattatattatattatattatattatattatgttatattatattatattatattgtatttattatattatattatattataataaattatgttatattatattatattatattatattatattatattatattatattatattatattatattatattatattatattatattatattatattatattatttagggTTGTCAGTTgattataaatgttcatttagttcactaaaattaaaattcataatTCAGTTTTACAGACCTTGCAGATTTGGCTGCAGCTTTCTtctgcatgtttttgtttttctttgagcAAAAAgtggaatttatttaaaaaaatatttcccaaattatgtttaacagagcaagtaattttttcacaataagtctgatattatatatttttttttcttctggagaaagtcttatttgttttatttcgactagaataaaagcagtttttaataaaaaacaaaaaacattttaaggtcaaatttattagcccctttaagctatattttttcgataaaggacagaacaaaccatcaacatACAATCACTtgtcttattaccctaacctgcctagttaacttaataagcctagttaagtctttaaatgtcactttaagctgtagagaagtatattgaaatatgtctagtcaaatattatttactgtcatcatggcaaagataaaataaatcagttattagaaatgagttattaaaactattatgtttagaaatgtgttaaaaaatctctctgttaaatagaaattggggaaaaataacagGGAAGCTAATAAGAAGATAACTATAGATAGTTATATAGGTTGGTAGGTAGGTAGTTAGGTAGCATATTAAAAAACAATGGCTTTAAAATTCCAGACACTCTGAATTATTCTGTGAGTAATGTTTCAACAATTGAACATTATGTAAAGTAAAATCATAAGAATTTATGATTGGAAATCTAACACAccagagcaaaataaataaataaataaataaataaataaataaataaataaataaataaataaataaataaataaataaataaataaataaataaataaataacttgtgtTTTACAAATCTTAATCTAACTTTAACCTTAATGAAATGATGTGGAGTGAACTAAAACAGAGCATTTGACCTGAAGTCACGAAATAGACGGCGAAATCTGCTTTGCACAgaaatatgagcaattccagcataatggatgtgacgtttgcagtaaaatctcaaaacataaattcacagagaaagtatatgttaacattatattgaaacatcttttttatttttattaaattactaaccacagagttatgagatcagaaaaaaacaatcaattaatcACAATTACAATTCAAAAAATCAATCACAATTTTTCATATTTCAAATCAAAACCCAAAAAGgtttgcaagtttacagtattcaACATAGCTTCTAGAGATTCTGTGAATTACCAGATTCACTATACaactaaaatgattgattttaatatattttattttacatttttttgcatttatgaggaaaacgctctgttatggatgtgacagatgtgaaatttccatttgtgtgacttttgtaaaacaaatataatttttgaaaaaaccttgacagatacatttttgagtatttccgtactgtaaaatacaagcctgcTCAAACAAACTTAGAAAAGGGTTTTTGGTGAAAACCTTTTTTCATGGCGAGGTTCACATTTGGCGAAGTgggtagcacttttgcctcacagcaagaaagtcgctgggttgagcctcagctgggtcagttggcatttctgtgtggagtttgcatgttctccccgtttttgcgtgggtttcctccaggtgctctggtgtcccccacagtccaaagacatgtgatataggtgaattgagtatgctaaaattgaccataatgtaggtgtgtgtgtgtgagtttgtgtacgAATgttttaccagtgatgggtttcagctggaagggcattcgctgcatgaaaaaatatgctgtataagttggcggttcattctgctgtggcgaccccagatcaataaggggactaagctgaaaaggaaatgaatgaatggatgaataaatgaatggaatttatttatggaattgctcatatgctAAAACAGCCACTATTACAGTGTATACAAACTTGATCACACTGTAGGTAAATTTAAACAACCAAAATAGACATATACGTCATAATGCTTTATATATATGAACATGTTAAAATGTCTTTTCACGAGAGCTGTTTAGTTGATATTTCATGAAATGCAGTGTTGAGGTCTATCTGGACATCTGTCACTCTGCAGCTGAGCTCATGATGAAGAATCGCCAGGGATGGGCAATAATACTGTGcactcaaatgtattttaaaataaaataccaaatacctcaattttacatgtatgtaaaataaactaaagaaaacagcagccacaaatgtattaaaataaactatttagaaaattatacaaaatacttttacaaggaaGTGTGACATTTCTTCACAAACCTTCGATCAATAGACCTGttggatcaatcccttcaccattaaactgattTGTGAAATAACAACAGCCtttctctgagcaagttttaagtcagcttctctgccAACTCATTCACCTCTACTCCTGTACATGAGTAGGCATTCATAAACATTGTTTCTCTTTCAATTTAGTAtaaattttgtacaaatttcataTAGAAAGTCCTGTCTTAAAGATGAtctctttaatcactgtaaaaaccatctaatgcagataatgagttggaaCATACTACTATATATCTTCATTGTTTTCATCCATTGTGTGGCCAGTGAAATGGACATCATCTCTTAACGTCTTATATTTTAACGAAgaggttattatttttttttgttcacataattatctttaaacaaatctttaatacttaatataaaaacataatttctgaaaactactaaaatCCACAGTTTTTGTCATTTCCATACATCATGCTAGTTTTTGCAAGTGTTCTCTTTAATGCacttctcttaaaaaaaaaaaaaaaaaaaaaaggtgttctctgtttttgcaaataaactctttatATACAATATGTCCTGCTGCAGAGGAGGAGCTTGGCCAGATGCACCCCAGCCCAAACCAAACGCATGAATTGAGCATgccattgttaatattaggagaaaCATAAACGTatgtatgcttttttggagtcgaACGCTTTGGACatcgcttgaacaaaatttaagactttgtaaaaactcaattatttttttaataccttttaagggccttaattttctcataactgatttatcaacttttaatacttttcaagaccccgcggacaccctgtaatAAATAGCATCTGTATGACAAATATAATTAACCTGATGTTTTCTAATAATGATAACGTGGCGTAGCATATAAACTAAAAATAGCTGTGGGCCTAAAGtcatggtcacactgcacttttagcCCCATAGATTTCCATGCATACGCATGCGAAAGCAGAAGACAGGAAACGCaggcttgtgcgacaagttttgcatgtTGCTGCGTTGTAAAGTTCTAGTTTGgcaaactctgacctgcaaaatattggagaaaaaaaaaacataggagggctgatcattttgacttcaatgaGCTATACAGTATATGGACagatagtgtttttcagccaatgatgaactctCGGTAAAAGCTTgccttaatgtgactatttttaatctgatatggttccttttacagcatggatgttgtgatgtaattcaaatataatcagttaaaaagGTTTAAGCATGCAATTGGTTGTTAAAGTGTGAAAAAAGACGCAAGCagcgtcattagcagcaggctagcgcaaaagtttcattgaaaatactggggtcaaatgaatttccatattttaaagatggtgcagaaaaatggaatttaatgcagtgcttcttgtttggtctgaaaCCTACTTAatattgtatctcagccaggTAGTGATGATCCAGGCCTgaagccagcctggtgaaaggggtgattctttttctcaaaaattgacttatttgcagttattcgcatcattttctatttaatggtgaaatttaaatattgcatttaagtGCAATTtttagcactatttttagctggattagcttgtggGATGGCCATCAAAACCACACATCATAATGTTCCAAAAGATATTagttaaatatttagaataaacaaTAATAGCCAAATTactattcaaattcattttaatatgagccgcttttggtgcttcacaccttattattgctcattttttgtttcaagaataacgtccaagatttagaataaaaagttacttgtaaaatctttcctccatttaaaaacaatacagtagtgagagatgacttcacttacgtcagattgtgtgttttcttgctGGTTGTTAAACTCATGAAAACTTGTTTGcactggccaaaactgattagctgaagtcacactgaagcCACAGCCGACAGAGGATTCCGCTTGCTCTTACTGACTTTTTCTATGGgttattttcaaattaattaaaaaaaaattaaatgaaagagaaATTAAAAGTTTGTGTGCATATATCTCATTGCAtgtggacattttaaaaagctttttcaaGAGATCTTTAGTTGATATtggatttaaaataatgaatcatAATAAATATCTACTGAGCCTAATTAATTTGAGTcatatttaaatcaaaatgtttctTTATGTTTCTGTATCACTAATTTAGTTGAGTTTACACCACATGTATGTatatttgctgtaaaaaatacAACACTGGTACTAGAGAAGTAATGGAGAAGAACTCTTCTCCTGCTCTGATTGACTTACTGCTGATCAagagttgtttacatttaaaccacttcaatattctgtcaccacggcaacctgagtttacactttaAATCCACACAACTGTCTGAAAGTCTTGAATCCTCTGCTTGAAGCTCTTTTAACTCTCCAAGTTGACAAGTTTCATCAGTTTGTCTGATTTAAGTTGATCTTCATGGAGCAGCGTCGCCTCAGAAGAACCAGAGCTCTTCCTGCACGCCTGAAAGACTTCTGGGTGGAGGGCGTCTCTTCTGTTCTGGATCCTGCAGCTGTGGTCAGGTTAGACCACACTTACAGCTGTGTCTCTGTTTCAGGCTTGGAGGAGCGACACCTGAAGAACACGGCTGTCCTTCCTGACCTCCGTCCAGCAGTCACAGTGTCTTCAGTGGATGCAGGTCAGCAGGCAGAGCCTCTCTCCATCCATGGCTGCAGCGTTGAAGTCTATCAGGACATCTACCGCTCTGTGGTGGAGCCCATGACCAAGAACCGCTGTGGTCACCGCCGTCCATACAGCCTGCAGCTGGGCCTGGAtatcaagcagcggctgtgggaaaCACTCGGGTGTCCTGTAGTGGAGGAGACAGTGCAGGCCGATGGACGAGTAATCATCACTGAGAGCAGGTCTGGTTCCAGCATCGCTCCTCGAATCCAGGTAGACATCAGTGAAGAGCCGCTGCCTGTGGAGCCCAGAAGAAAGAGGCCCAGACACTGAGTCCTCACATGCAGAATCACACCACATGCTgcatatgtatatactgtaaatactgtatatagttCTAGAGCAAGTTTACAAGTAAGTTTCCTTTTCACACACTTTTGTTTCATCAATAGGATGTGTTTGGTGATTGTCAGTTGGTTTGCTCATGGTTTTTAATGCTTTGCGGTGTGGTCATCAGGTGGTTTTCTGAGCGGTTGTTCTCATGTCGCTGGTCGGTCGCTGGACTCCTCTGGGTGTTTCGATGCGTTTAGTGATTCGCGGTGTCtggtaggttaggttagggtccctcacacggtttgcagcttgacgtgctgtgagggcttgtgtgcatcagtgatgctgagagcttcaccactggtacttcacagataccggcagggtcacccatagtggacaggtctcagctgagatgcccgactaagacaaaccGGCAGATTCTGGACCACAGAAGATCATACACTGAAGACAATGCCAACAACATCAGAATTAAGAAGACACAGGTGGAAGTGGAACAATCGACTgtacaagacaaaataaaataaa

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:1902284 neuron projection extension involved in neuron projection guidance biological_process
GO:0061387 regulation of extent of cell growth biological_process
GO:0072359 circulatory system development biological_process
GO:0006928 movement of cell or subcellular component biological_process
GO:0006935 chemotaxis biological_process
GO:0048513 animal organ development biological_process
GO:0050919 negative chemotaxis biological_process
GO:0050922 negative regulation of chemotaxis biological_process
GO:0000904 cell morphogenesis involved in differentiation biological_process
GO:0009605 response to external stimulus biological_process
GO:0030182 neuron differentiation biological_process
GO:1990138 neuron projection extension biological_process
GO:0048812 neuron projection morphogenesis biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:1902667 regulation of axon guidance biological_process
GO:0120039 plasma membrane bounded cell projection morphogenesis biological_process
GO:0010977 negative regulation of neuron projection development biological_process
GO:0048841 regulation of axon extension involved in axon guidance biological_process
GO:0048846 axon extension involved in axon guidance biological_process
GO:0051239 regulation of multicellular organismal process biological_process
GO:0031345 negative regulation of cell projection organization biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0030516 regulation of axon extension biological_process
GO:0030517 negative regulation of axon extension biological_process
GO:0048856 anatomical structure development biological_process
GO:0048858 cell projection morphogenesis biological_process
GO:0048588 developmental cell growth biological_process
GO:0001558 regulation of cell growth biological_process
GO:0048869 cellular developmental process biological_process
GO:0045595 regulation of cell differentiation biological_process
GO:2000026 regulation of multicellular organismal development biological_process
GO:0032990 cell part morphogenesis biological_process
GO:0060485 mesenchyme development biological_process
GO:0010771 negative regulation of cell morphogenesis involved in differentiation biological_process
GO:0048640 negative regulation of developmental growth biological_process
GO:0050767 regulation of neurogenesis biological_process
GO:0040011 locomotion biological_process
GO:0050771 negative regulation of axonogenesis biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0097485 neuron projection guidance biological_process
GO:0061564 axon development biological_process
GO:0045926 negative regulation of growth biological_process
GO:0048667 cell morphogenesis involved in neuron differentiation biological_process
GO:0007399 nervous system development biological_process
GO:0030308 negative regulation of cell growth biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0048675 axon extension biological_process
GO:0007409 axonogenesis biological_process
GO:0007411 axon guidance biological_process
GO:0045664 regulation of neuron differentiation biological_process
GO:0045665 negative regulation of neuron differentiation biological_process
GO:0060284 regulation of cell development biological_process
GO:0042330 taxis biological_process
GO:0007417 central nervous system development biological_process
GO:0022008 neurogenesis biological_process
GO:0048699 generation of neurons biological_process
GO:0008361 regulation of cell size biological_process
GO:0031175 neuron projection development biological_process
GO:0016049 cell growth biological_process
GO:0051960 regulation of nervous system development biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00029509 lncRNA downstream 6274 39588596 ~ 39589155 (-) True XLOC_014968
TCONS_00029507 lncRNA downstream 16427 39427180 ~ 39579002 (-) False XLOC_014967
TCONS_00029506 lncRNA downstream 16427 39427180 ~ 39579002 (-) False XLOC_014967
TCONS_00029508 lncRNA downstream 16427 39560710 ~ 39579002 (-) True XLOC_014967
TCONS_00030321 lncRNA downstream 16526 39432317 ~ 39578903 (-) False XLOC_014967
TCONS_00029792 lncRNA upstream 152001 39754692 ~ 39755650 (-) False XLOC_014970
TCONS_00030323 lncRNA upstream 152085 39754776 ~ 39757506 (-) False XLOC_014970
TCONS_00030324 lncRNA upstream 152085 39754776 ~ 39758129 (-) False XLOC_014970
TCONS_00030325 lncRNA upstream 152085 39754776 ~ 39758178 (-) False XLOC_014970
TCONS_00030326 lncRNA upstream 152085 39754776 ~ 39758858 (-) False XLOC_014970
TCONS_00029502 mRNA downstream 722779 38766613 ~ 38872650 (-) False XLOC_014965
TCONS_00029504 mRNA downstream 764709 38793238 ~ 38830720 (-) True XLOC_014965
TCONS_00029503 mRNA downstream 764847 38783225 ~ 38830582 (-) False XLOC_014965
TCONS_00029499 mRNA downstream 983615 38474567 ~ 38611814 (-) False XLOC_014963
TCONS_00029498 mRNA downstream 1055759 38473758 ~ 38539670 (-) False XLOC_014963
TCONS_00029510 mRNA upstream 564672 40167363 ~ 40175800 (-) True XLOC_014971
TCONS_00029511 mRNA upstream 579950 40182641 ~ 40186328 (-) False XLOC_014972
TCONS_00029513 mRNA upstream 583986 40186677 ~ 40192249 (-) False XLOC_014973
TCONS_00029514 mRNA upstream 584837 40187528 ~ 40191358 (-) True XLOC_014973
TCONS_00029515 mRNA upstream 593771 40196462 ~ 40199081 (-) False XLOC_014974
TCONS_00029505 other downstream 391694 39203618 ~ 39203735 (-) True XLOC_014966
TCONS_00029497 other downstream 1131016 38464295 ~ 38464413 (-) True XLOC_014962
TCONS_00029496 other downstream 1131180 38464127 ~ 38464249 (-) True XLOC_014961
TCONS_00029494 other downstream 1533305 38062000 ~ 38062124 (-) True XLOC_014958
TCONS_00029493 other downstream 1566811 38028498 ~ 38028618 (-) True XLOC_014957
TCONS_00029512 other upstream 580043 40182734 ~ 40186263 (-) True XLOC_014972
TCONS_00029518 other upstream 1033881 40636572 ~ 40636691 (-) True XLOC_014976
TCONS_00029522 other upstream 1178477 40781168 ~ 40781271 (-) True XLOC_014978
TCONS_00029535 other upstream 1750131 41352822 ~ 41371978 (-) False XLOC_014985
TCONS_00029546 other upstream 2570423 42173114 ~ 42173228 (-) True XLOC_014994

Expression Profile

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